C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ubiquitin-like modifier 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578238 SUMO2-003 ENSG00000188612 9606 - 17:75168298-75182563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000578238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000578238 56.443±0.00 68.870±0.00 26.849±0.00 44.572±0.00 38.392±18.58 51.569±29.01 5.923±0.00 45.254±0.00 25.926±0.02 14.747±0.00 30.148±14.05 111.458±26.09 103.544±19.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0001JI CIL_0001JI_0001 CGP 17:75130225-75168281
CIL_0001HE CIL_0001HE_0001 CGP 17:75135248-75182983
CIL_0007IA CIL_0007IA_0001 CGP 17:75165586-75235758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0016925 IEA protein sumoylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 477
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 477
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 475
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 457
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000097581 Gm10540-201 processed_pseudogene Mus_musculus 0 392
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 385
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000122370 Smt3h2-ps2-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 340
ENSMUST00000120751 Gm11556-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000120621 Gm12721-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 281
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 237
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 235

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