C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007IA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188612-ENSG00000125450 CGP 9606 17:75165586-75235758
GeneTranscriptPositionBiotype
ENSG00000125450 (NUP85)
nucleoporin 85kDa 		ENST00000245544 (NUP85-001) 75205691-75235758 protein_coding
ENST00000449421 (NUP85-003) 75205709-75226978 processed_transcript
ENST00000540768 (NUP85-006) 75228161-75235757 protein_coding
ENST00000577208 (NUP85-010) 75205720-75216344 processed_transcript
ENST00000577561 (NUP85-013) 75218293-75225949 retained_intron
ENST00000577645 (NUP85-014) 75225368-75231977 retained_intron
ENST00000578294 (NUP85-020) 75232920-75234782 retained_intron
ENST00000578830 (NUP85-012) 75215801-75232954 nonsense_mediated_decay
ENST00000578987 (NUP85-021) 75234667-75235757 nonsense_mediated_decay
ENST00000579298 (NUP85-004) 75205720-75235691 protein_coding
ENST00000579324 (NUP85-002) 75205707-75235757 protein_coding
ENST00000579557 (NUP85-025) 75225103-75232952 protein_coding
ENST00000579838 (NUP85-023) 75234704-75235757 protein_coding
ENST00000579900 (NUP85-024) 75233125-75235758 protein_coding
ENST00000580879 (NUP85-018) 75226108-75232947 nonsense_mediated_decay
ENST00000581104 (NUP85-005) 75205720-75235710 nonsense_mediated_decay
ENST00000581335 (NUP85-017) 75227948-75229126 processed_transcript
ENST00000582681 (NUP85-019) 75231138-75232941 retained_intron
ENST00000582833 (NUP85-007) 75205707-75208620 processed_transcript
ENST00000583070 (NUP85-016) 75225391-75235152 protein_coding
ENST00000583548 (NUP85-009) 75205720-75216365 processed_transcript
ENST00000583569 (NUP85-008) 75205659-75215775 protein_coding
ENST00000583877 (NUP85-011) 75218208-75226157 protein_coding
ENST00000583948 (NUP85-015) 75205690-75226058 processed_transcript
ENST00000584155 (NUP85-022) 75234753-75235752 nonsense_mediated_decay
ENSG00000188612 (SUMO2)
small ubiquitin-like modifier 2 		ENST00000314523 (SUMO2-002) 75167868-75182956 protein_coding
ENST00000420826 (SUMO2-001) 75165586-75182983 protein_coding
ENST00000578238 (SUMO2-003) 75168298-75182563 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0007IA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020738-ENSMUSG00000020739 CGP 10090 11:115523102-115583985
GeneTranscriptPositionBiotype
ENSMUSG00000020739 (Nup85)
nucleoporin 85 		ENSMUST00000021085 (Nup85-001) 115564434-115583985 protein_coding
ENSMUST00000127126 (Nup85-009) 115581096-115582034 processed_transcript
ENSMUST00000128745 (Nup85-008) 115581748-115582278 processed_transcript
ENSMUST00000134209 (Nup85-007) 115583057-115583783 processed_transcript
ENSMUST00000135893 (Nup85-005) 115564525-115569891 processed_transcript
ENSMUST00000138998 (Nup85-004) 115581641-115583906 processed_transcript
ENSMUST00000140986 (Nup85-002) 115577984-115582039 protein_coding
ENSMUST00000143351 (Nup85-006) 115580504-115581419 processed_transcript
ENSMUST00000144473 (Nup85-003) 115570115-115581843 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007IA_0001ENSG00000125450ENST00000245544ENST00000449421ENST00000540768ENST00000577208ENST00000577561ENST00000577645ENST00000578294ENST00000578830ENST00000578987ENST00000579298ENST00000579324ENST00000579557ENST00000579838ENST00000579900ENST00000580879ENST00000581104ENST00000581335ENST00000582681ENST00000582833ENST00000583070ENST00000583548ENST00000583569ENST00000583877ENST00000583948ENST00000584155ENSG00000188612ENST00000314523ENST00000420826ENST00000578238CIL_0007IA_0002ENSMUSG00000020739ENSMUST00000021085ENSMUST00000127126ENSMUST00000128745ENSMUST00000134209ENSMUST00000135893ENSMUST00000138998ENSMUST00000140986ENSMUST00000143351ENSMUST00000144473
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007IA_0001ENSG00000125450ENST00000245544ENST00000540768ENST00000577208ENST00000577561ENST00000577645ENST00000578294ENST00000578830ENST00000578987ENST00000579298ENST00000579324ENST00000579557ENST00000581104ENST00000583070ENST00000583877ENST00000583948ENSG00000188612ENST00000314523ENST00000420826ENST00000578238CIL_0007IA_0002ENSMUSG00000020739ENSMUST00000021085ENSMUST00000138998ENSMUST00000140986ENSMUST00000144473
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125450 ENST00000245544 2.251±0.00 N/A N/A N/A 2.052±1.20 2.051±1.46 1.979±0.00 N/A N/A N/A N/A 7.430±0.18 6.145±5.80 12.816±0.00
ENST00000449421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540768 N/A 4.180±0.00 N/A N/A 1.704±1.18 N/A 1.015±0.81 0.310±0.00 N/A 1.978±0.00 N/A 4.852±0.00 N/A 3.820±0.00
ENST00000577208 N/A N/A N/A 3.698±0.00 N/A N/A 0.999±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000577561 N/A N/A 0.822±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577645 N/A N/A N/A 1.256±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.499±0.00 N/A N/A N/A
ENST00000578830 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.786±0.00 N/A N/A N/A N/A
ENST00000578987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.942±0.00
ENST00000579298 N/A N/A 0.260±0.00 1.456±0.00 N/A N/A N/A N/A N/A N/A 3.135±0.00 2.528±1.05 4.242±0.00 N/A
ENST00000579324 2.351±0.00 3.854±0.00 N/A N/A N/A N/A N/A N/A 2.443±0.00 N/A 2.241±0.00 N/A 2.197±0.66 N/A
ENST00000579557 N/A N/A 0.621±0.00 N/A N/A N/A N/A N/A N/A N/A 4.396±0.00 2.644±0.00 N/A N/A
ENST00000579838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581104 N/A 5.387±0.00 N/A 1.412±0.00 3.042±0.00 N/A 1.052±0.57 4.733±0.00 1.501±0.00 2.281±0.00 N/A 1.025±0.00 N/A 3.493±0.00
ENST00000581335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583070 5.632±0.00 N/A 0.542±0.00 4.576±0.00 N/A 7.226±0.00 N/A 7.989±7.03 3.459±0.00 N/A N/A N/A 7.308±1.10 N/A
ENST00000583548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583877 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.790±0.00 N/A N/A N/A N/A
ENST00000583948 N/A N/A N/A 1.482±0.00 0.871±0.00 2.730±0.00 0.545±0.00 1.850±0.00 1.034±0.00 3.057±0.00 N/A N/A N/A N/A
ENST00000584155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188612 ENST00000314523 69.209±0.00 75.925±0.00 N/A 32.947±15.18 69.370±0.00 92.289±0.00 3.432±0.00 36.020±27.38 29.835±0.00 116.448±0.00 27.174±23.42 60.203±48.07 66.537±6.04 115.259±0.00
ENST00000420826 5.373±0.00 8.024±0.00 5.550±0.00 8.142±0.42 5.550±0.71 6.659±3.33 3.322±0.00 7.663±0.77 6.097±2.00 11.617±4.91 4.280±1.79 20.148±12.25 12.814±0.00 15.347±0.00
ENST00000578238 56.443±0.00 68.870±0.00 26.849±0.00 44.572±0.00 38.392±18.58 51.569±29.01 5.923±0.00 45.254±0.00 25.926±0.02 14.747±0.00 30.148±14.05 111.458±26.09 N/A 103.544±19.91
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020739 ENSMUST00000021085 9.768±1.81 6.887±2.45 21.037±0.55 21.868±1.42 10.344±3.67 7.314±2.28 6.292±1.56 7.438±2.12 24.548±21.91 9.301±2.83 7.799±1.13 16.873±6.52 20.766±17.21 11.045±2.89
ENSMUST00000127126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138998 N/A N/A N/A 9.215±0.00 14.772±6.97 N/A 4.719±0.48 6.831±0.72 N/A 7.315±0.00 4.508±0.00 16.423±1.15 18.065±13.22 9.444±0.38
ENSMUST00000140986 N/A 6.746±0.00 N/A N/A 21.497±0.00 N/A N/A N/A N/A N/A N/A 9.940±0.00 N/A N/A
ENSMUST00000143351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.342±0.00 N/A

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