C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lin-54 DREAM MuvB core complex component
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000189308 LIN54 9606 - 4:82909973-83012926 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340417 LIN54-001 82924603-83010829 protein_coding
  ENST00000442461 LIN54-006 82925715-83010731 protein_coding
  ENST00000446851 LIN54-004 82925715-83010823 protein_coding
  ENST00000505397 LIN54-003 82927777-83012926 protein_coding
  ENST00000505905 LIN54-009 82909973-82928198 processed_transcript
  ENST00000506560 LIN54-008 82927586-83010709 protein_coding
  ENST00000508171 LIN54-007 82927586-83010710 nonsense_mediated_decay
  ENST00000509748 LIN54-010 82984162-83012911 processed_transcript
  ENST00000510557 LIN54-002 82927560-83012887 protein_coding
  ENST00000510877 LIN54-005 82925548-83010821 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340417ENST00000442461ENST00000446851ENST00000505397ENST00000506560ENST00000510557ENST00000510877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340417 0.262±0.00 0.626±0.00 0.249±0.00 0.915±0.36 0.318±0.00 N/A 0.266±0.00 0.348±0.00 0.625±0.55 N/A 0.487±0.00 0.518±0.09 0.303±0.01 N/A
ENST00000442461 0.883±0.00 N/A N/A 1.465±0.00 0.983±0.00 0.951±0.00 0.279±0.00 1.555±0.09 0.692±0.00 0.819±0.00 1.528±0.00 1.508±1.19 0.315±0.00 0.546±0.00
ENST00000446851 N/A N/A N/A 2.073±0.00 0.836±0.00 N/A 0.498±0.25 N/A 0.983±0.00 N/A 1.079±0.00 1.020±0.65 1.385±0.58 1.058±0.51
ENST00000505397 N/A N/A 0.457±0.00 N/A 0.824±0.00 1.229±0.00 0.431±0.14 N/A N/A 1.096±0.59 0.633±0.00 1.312±0.69 N/A 1.514±0.74
ENST00000506560 N/A N/A N/A N/A N/A 0.887±0.00 N/A N/A 0.790±0.00 N/A N/A N/A N/A N/A
ENST00000510557 N/A N/A 0.593±0.00 N/A 0.542±0.00 0.779±0.00 N/A N/A N/A N/A N/A N/A N/A 1.179±0.00
ENST00000510877 0.316±0.00 N/A N/A N/A 0.510±0.00 0.760±0.00 0.202±0.00 0.506±0.00 N/A 0.751±0.00 N/A 0.730±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0002 CGP 4:82909973-83075818

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0051726 TAS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063194 lin54 lin-54 homolog protein_coding Danio_rerio
ENSMUSG00000035310 Lin54 lin-54 homolog (C. elegans) protein_coding Mus_musculus

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