C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-54 DREAM MuvB core complex component
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340417 LIN54-001 ENSG00000189308 9606 - 4:82924603-83010829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENST00000340417
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENST00000340417 0.262±0.00 0.626±0.00 0.249±0.00 0.915±0.36 0.318±0.00 0.266±0.00 0.348±0.00 0.625±0.55 0.487±0.00 0.518±0.09 0.303±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0002 CGP 4:82909973-83075818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0051726 TAS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123572 Lin54-003 protein_coding Mus_musculus 0 3964
ENSMUST00000046154 Lin54-001 protein_coding Mus_musculus 0 3639
ENSMUST00000154921 Lin54-007 protein_coding Mus_musculus 0 2475
ENSMUST00000149714 Lin54-006 protein_coding Mus_musculus 0 2475
ENSMUST00000137750 Lin54-005 protein_coding Mus_musculus 0 2475
ENSMUST00000144030 Lin54-002 nonsense_mediated_decay Mus_musculus 0 2098
ENSMUST00000152387 Lin54-008 protein_coding Mus_musculus 0 2012
ENSMUST00000139234 Lin54-009 nonsense_mediated_decay Mus_musculus 0 1718
ENSMUST00000144716 Lin54-004 retained_intron Mus_musculus 0 1493
ENSMUST00000134439 Lin54-010 nonsense_mediated_decay Mus_musculus 0 1127

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