C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lin-54 homolog (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035310 Lin54 10090 - 5:100441918-100500639 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046154 Lin54-001 100442033-100500626 protein_coding
  ENSMUST00000123572 Lin54-003 100442042-100498578 protein_coding
  ENSMUST00000134439 Lin54-010 100459586-100485411 nonsense_mediated_decay
  ENSMUST00000137750 Lin54-005 100441928-100498591 protein_coding
  ENSMUST00000139234 Lin54-009 100443552-100498523 nonsense_mediated_decay
  ENSMUST00000144030 Lin54-002 100442200-100500639 nonsense_mediated_decay
  ENSMUST00000144716 Lin54-004 100484329-100498578 retained_intron
  ENSMUST00000149714 Lin54-006 100441918-100500592 protein_coding
  ENSMUST00000152387 Lin54-008 100443552-100498523 protein_coding
  ENSMUST00000154921 Lin54-007 100442033-100498633 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046154ENSMUST00000123572ENSMUST00000134439ENSMUST00000137750ENSMUST00000139234ENSMUST00000144030ENSMUST00000144716ENSMUST00000149714ENSMUST00000152387ENSMUST00000154921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046154 0.897±0.24 1.018±0.21 0.991±0.11 2.484±0.27 1.238±0.68 2.280±0.34 0.527±0.11 1.475±0.38 3.700±3.49 1.377±0.56 0.504±0.10 1.249±0.60 4.871±1.87 2.854±0.30
ENSMUST00000123572 0.730±0.20 0.315±0.00 0.687±0.00 0.470±0.00 0.956±0.00 0.991±0.00 N/A N/A 0.573±0.00 N/A 0.300±0.07 1.270±0.78 N/A N/A
ENSMUST00000134439 N/A N/A N/A N/A 1.879±0.00 N/A N/A N/A 1.425±0.00 N/A N/A 3.470±1.06 N/A N/A
ENSMUST00000137750 0.801±0.10 0.724±0.09 0.565±0.00 N/A 0.588±0.00 0.609±0.00 0.448±0.16 0.810±0.00 0.317±0.00 0.836±0.00 0.227±0.11 0.992±0.35 N/A N/A
ENSMUST00000139234 N/A N/A N/A 0.596±0.00 N/A N/A N/A N/A N/A N/A N/A 0.773±0.00 1.221±0.00 N/A
ENSMUST00000144030 N/A 1.470±0.42 N/A N/A 0.736±0.09 1.511±0.47 0.609±0.00 0.591±0.06 0.643±0.17 0.654±0.00 N/A 0.978±0.25 1.056±0.00 N/A
ENSMUST00000144716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.00 N/A N/A
ENSMUST00000149714 N/A 0.461±0.00 N/A N/A 1.225±0.00 N/A 0.398±0.14 1.170±0.00 N/A N/A 0.473±0.18 N/A N/A N/A
ENSMUST00000152387 0.779±0.33 N/A N/A N/A 0.962±0.16 1.793±0.77 N/A 0.976±0.15 0.691±0.23 N/A N/A 2.027±0.90 1.887±0.00 2.216±0.39
ENSMUST00000154921 N/A 0.622±0.00 0.701±0.03 0.708±0.09 1.148±0.00 N/A 0.303±0.01 1.202±0.55 1.129±0.32 1.027±0.00 0.227±0.00 1.082±0.53 2.548±1.77 1.667±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063194 lin54 lin-54 homolog protein_coding Danio_rerio
ENSG00000189308 LIN54 lin-54 DREAM MuvB core complex component protein_coding Homo_sapiens

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