C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-54 DREAM MuvB core complex component
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510877 LIN54-005 ENSG00000189308 9606 - 4:82925548-83010821 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungOvaryENST00000510877
Transcript ID Adipose Breast Colon Heart Kidney Lung Ovary
ENST00000510877 0.316±0.00 0.510±0.00 0.760±0.00 0.202±0.00 0.506±0.00 0.751±0.00 0.730±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0002 CGP 4:82909973-83075818

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137750 Lin54-005 protein_coding Mus_musculus 0 2837
ENSMUST00000154921 Lin54-007 protein_coding Mus_musculus 0 2488
ENSMUST00000149714 Lin54-006 protein_coding Mus_musculus 0 2488
ENSMUST00000046154 Lin54-001 protein_coding Mus_musculus 0 2455
ENSMUST00000123572 Lin54-003 protein_coding Mus_musculus 0 2455
ENSMUST00000144030 Lin54-002 nonsense_mediated_decay Mus_musculus 0 2098
ENSMUST00000152387 Lin54-008 protein_coding Mus_musculus 0 2012
ENSMUST00000139234 Lin54-009 nonsense_mediated_decay Mus_musculus 0 1718
ENSMUST00000134439 Lin54-010 nonsense_mediated_decay Mus_musculus 0 669
ENSMUST00000144716 Lin54-004 retained_intron Mus_musculus 0 363

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