C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00052W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063194-ENSDARG00000043732 CGP 7955 10:11293251-11334372
GeneTranscriptPositionBiotype
ENSDARG00000043732 (cops4)
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) 		ENSDART00000064215 (cops4-001) 11321780-11334372 protein_coding
ENSDARG00000063194 (lin54)
lin-54 homolog 		ENSDART00000092110 (lin54-001) 11293251-11318997 protein_coding
ENSDART00000134303 (lin54-003) 11297865-11299009 retained_intron
ENSDART00000135527 (lin54-002) 11313397-11317429 protein_coding
CIL_00052W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000189308-ENSG00000138663 CGP 9606 4:82909973-83075818
GeneTranscriptPositionBiotype
ENSG00000138663 (COPS4)
COP9 signalosome subunit 4 		ENST00000264389 (COPS4-001) 83035090-83075818 protein_coding
ENST00000503682 (COPS4-003) 83035207-83075797 protein_coding
ENST00000504274 (COPS4-009) 83062975-83068506 retained_intron
ENST00000506443 (COPS4-006) 83035199-83057062 processed_transcript
ENST00000507376 (COPS4-007) 83035201-83049959 nonsense_mediated_decay
ENST00000509093 (COPS4-002) 83034447-83075789 protein_coding
ENST00000509317 (COPS4-011) 83035173-83075371 protein_coding
ENST00000510801 (COPS4-010) 83035174-83049984 processed_transcript
ENST00000511653 (COPS4-004) 83035225-83075756 protein_coding
ENST00000511708 (COPS4-008) 83035430-83049307 processed_transcript
ENST00000511891 (COPS4-005) 83035171-83049515 retained_intron
ENSG00000189308 (LIN54)
lin-54 DREAM MuvB core complex component 		ENST00000340417 (LIN54-001) 82924603-83010829 protein_coding
ENST00000442461 (LIN54-006) 82925715-83010731 protein_coding
ENST00000446851 (LIN54-004) 82925715-83010823 protein_coding
ENST00000505397 (LIN54-003) 82927777-83012926 protein_coding
ENST00000505905 (LIN54-009) 82909973-82928198 processed_transcript
ENST00000506560 (LIN54-008) 82927586-83010709 protein_coding
ENST00000508171 (LIN54-007) 82927586-83010710 nonsense_mediated_decay
ENST00000509748 (LIN54-010) 82984162-83012911 processed_transcript
ENST00000510557 (LIN54-002) 82927560-83012887 protein_coding
ENST00000510877 (LIN54-005) 82925548-83010821 nonsense_mediated_decay
ENSG00000199530 (Y_RNA)
Y RNA 		ENST00000362660 (Y_RNA.1-242) 82944738-82944845 misc_RNA
CIL_00052W_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035310-ENSMUSG00000035297 CGP 10090 5:100441918-100547803
GeneTranscriptPositionBiotype
ENSMUSG00000035297 (Cops4)
COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana) 		ENSMUST00000045993 (Cops4-001) 100518309-100547803 protein_coding
ENSMUST00000123069 (Cops4-004) 100518472-100533391 nonsense_mediated_decay
ENSMUST00000123492 (Cops4-007) 100528640-100543923 nonsense_mediated_decay
ENSMUST00000123559 (Cops4-003) 100532242-100547780 retained_intron
ENSMUST00000146476 (Cops4-005) 100518737-100537354 protein_coding
ENSMUST00000147729 (Cops4-002) 100518443-100532095 retained_intron
ENSMUST00000151414 (Cops4-006) 100518457-100537468 protein_coding
ENSMUSG00000035310 (Lin54)
lin-54 homolog (C. elegans) 		ENSMUST00000046154 (Lin54-001) 100442033-100500626 protein_coding
ENSMUST00000123572 (Lin54-003) 100442042-100498578 protein_coding
ENSMUST00000134439 (Lin54-010) 100459586-100485411 nonsense_mediated_decay
ENSMUST00000137750 (Lin54-005) 100441928-100498591 protein_coding
ENSMUST00000139234 (Lin54-009) 100443552-100498523 nonsense_mediated_decay
ENSMUST00000144030 (Lin54-002) 100442200-100500639 nonsense_mediated_decay
ENSMUST00000144716 (Lin54-004) 100484329-100498578 retained_intron
ENSMUST00000149714 (Lin54-006) 100441918-100500592 protein_coding
ENSMUST00000152387 (Lin54-008) 100443552-100498523 protein_coding
ENSMUST00000154921 (Lin54-007) 100442033-100498633 protein_coding
ENSMUSG00000088742 (Gm23222)
predicted gene, 23222 		ENSMUST00000158117 (Gm23222-201) 100500143-100500218 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00052W_0001ENSDARG00000043732ENSDART00000064215ENSDARG00000063194ENSDART00000092110ENSDART00000134303ENSDART00000135527CIL_00052W_0002ENSG00000138663ENST00000264389ENST00000503682ENST00000504274ENST00000506443ENST00000507376ENST00000509093ENST00000509317ENST00000510801ENST00000511653ENST00000511708ENST00000511891ENSG00000189308ENST00000340417ENST00000442461ENST00000446851ENST00000505397ENST00000505905ENST00000506560ENST00000508171ENST00000509748ENST00000510557ENST00000510877ENSG00000199530ENST00000362660CIL_00052W_0003ENSMUSG00000035297ENSMUST00000045993ENSMUST00000123069ENSMUST00000123492ENSMUST00000123559ENSMUST00000146476ENSMUST00000147729ENSMUST00000151414ENSMUSG00000035310ENSMUST00000046154ENSMUST00000123572ENSMUST00000134439ENSMUST00000137750ENSMUST00000139234ENSMUST00000144030ENSMUST00000144716ENSMUST00000149714ENSMUST00000152387ENSMUST00000154921ENSMUSG00000088742ENSMUST00000158117
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00052W_0001ENSDARG00000043732ENSDART00000064215ENSDARG00000063194ENSDART00000092110CIL_00052W_0002ENSG00000138663ENST00000264389ENST00000503682ENST00000506443ENST00000509317ENST00000511653ENSG00000189308ENST00000340417ENST00000442461ENST00000446851ENST00000505397ENST00000506560ENST00000510557ENST00000510877ENSG00000199530ENST00000362660CIL_00052W_0003ENSMUSG00000035297ENSMUST00000045993ENSMUST00000123069ENSMUST00000123559ENSMUST00000147729ENSMUST00000151414ENSMUSG00000035310ENSMUST00000046154ENSMUST00000123572ENSMUST00000134439ENSMUST00000137750ENSMUST00000139234ENSMUST00000144030ENSMUST00000144716ENSMUST00000149714ENSMUST00000152387ENSMUST00000154921ENSMUSG00000088742ENSMUST00000158117
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043732 ENSDART00000064215 N/A N/A N/A 24.832±0.86 N/A N/A 26.667±10.14 24.924±7.23 1.399±0.00 N/A 17.090±0.00 N/A N/A N/A
ENSDARG00000063194 ENSDART00000092110 N/A N/A N/A 4.379±0.24 N/A N/A 1.798±0.05 1.499±0.00 0.632±0.00 N/A 1.176±0.00 N/A N/A N/A
ENSDART00000134303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138663 ENST00000264389 10.278±0.00 12.470±0.00 3.218±0.00 17.240±1.08 8.751±2.55 7.273±2.32 11.272±4.59 10.189±3.91 4.245±1.26 5.803±1.30 19.789±5.34 13.420±6.03 12.553±1.92 25.230±3.30
ENST00000503682 2.321±0.00 N/A N/A 5.225±0.00 1.130±0.00 2.190±0.00 N/A N/A 3.091±0.00 N/A N/A N/A 1.798±0.00 N/A
ENST00000504274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506443 N/A N/A 2.698±0.00 N/A 4.243±0.00 N/A N/A 3.988±0.00 7.284±0.00 5.016±0.00 N/A N/A N/A N/A
ENST00000507376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509317 N/A N/A N/A N/A 6.914±0.00 4.116±0.00 N/A 9.973±0.00 N/A N/A N/A N/A N/A N/A
ENST00000510801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511653 N/A N/A N/A 4.538±0.00 N/A 2.053±0.00 2.300±0.71 N/A N/A 1.569±0.12 N/A 2.403±0.00 N/A 6.134±1.45
ENST00000511708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189308 ENST00000340417 0.262±0.00 0.626±0.00 0.249±0.00 0.915±0.36 0.318±0.00 N/A 0.266±0.00 0.348±0.00 0.625±0.55 N/A 0.487±0.00 0.518±0.09 0.303±0.01 N/A
ENST00000442461 0.883±0.00 N/A N/A 1.465±0.00 0.983±0.00 0.951±0.00 0.279±0.00 1.555±0.09 0.692±0.00 0.819±0.00 1.528±0.00 1.508±1.19 0.315±0.00 0.546±0.00
ENST00000446851 N/A N/A N/A 2.073±0.00 0.836±0.00 N/A 0.498±0.25 N/A 0.983±0.00 N/A 1.079±0.00 1.020±0.65 1.385±0.58 1.058±0.51
ENST00000505397 N/A N/A 0.457±0.00 N/A 0.824±0.00 1.229±0.00 0.431±0.14 N/A N/A 1.096±0.59 0.633±0.00 1.312±0.69 N/A 1.514±0.74
ENST00000505905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506560 N/A N/A N/A N/A N/A 0.887±0.00 N/A N/A 0.790±0.00 N/A N/A N/A N/A N/A
ENST00000508171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510557 N/A N/A 0.593±0.00 N/A 0.542±0.00 0.779±0.00 N/A N/A N/A N/A N/A N/A N/A 1.179±0.00
ENST00000510877 0.316±0.00 N/A N/A N/A 0.510±0.00 0.760±0.00 0.202±0.00 0.506±0.00 N/A 0.751±0.00 N/A 0.730±0.00 N/A N/A
ENSG00000199530 ENST00000362660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.016±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035297 ENSMUST00000045993 20.393±3.23 6.543±2.36 27.382±2.06 22.553±8.69 12.776±5.16 11.017±2.09 20.119±0.77 16.055±0.70 17.122±9.14 13.225±1.46 33.019±0.98 15.530±8.33 29.962±15.18 73.581±1.03
ENSMUST00000123069 N/A N/A N/A 35.241±0.00 N/A N/A N/A N/A N/A N/A N/A 59.398±0.00 62.806±31.96 124.356±0.00
ENSMUST00000123492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123559 N/A 3.675±1.67 N/A N/A 3.629±1.15 3.469±0.87 N/A N/A N/A 1.913±0.00 N/A 8.873±1.87 N/A N/A
ENSMUST00000146476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.106±0.00 N/A N/A
ENSMUST00000151414 N/A 3.147±0.00 N/A N/A 8.566±0.00 N/A N/A N/A N/A N/A N/A 11.414±3.45 N/A N/A
ENSMUSG00000035310 ENSMUST00000046154 0.897±0.24 1.018±0.21 0.991±0.11 2.484±0.27 1.238±0.68 2.280±0.34 0.527±0.11 1.475±0.38 3.700±3.49 1.377±0.56 0.504±0.10 1.249±0.60 4.871±1.87 2.854±0.30
ENSMUST00000123572 0.730±0.20 0.315±0.00 0.687±0.00 0.470±0.00 0.956±0.00 0.991±0.00 N/A N/A 0.573±0.00 N/A 0.300±0.07 1.270±0.78 N/A N/A
ENSMUST00000134439 N/A N/A N/A N/A 1.879±0.00 N/A N/A N/A 1.425±0.00 N/A N/A 3.470±1.06 N/A N/A
ENSMUST00000137750 0.801±0.10 0.724±0.09 0.565±0.00 N/A 0.588±0.00 0.609±0.00 0.448±0.16 0.810±0.00 0.317±0.00 0.836±0.00 0.227±0.11 0.992±0.35 N/A N/A
ENSMUST00000139234 N/A N/A N/A 0.596±0.00 N/A N/A N/A N/A N/A N/A N/A 0.773±0.00 1.221±0.00 N/A
ENSMUST00000144030 N/A 1.470±0.42 N/A N/A 0.736±0.09 1.511±0.47 0.609±0.00 0.591±0.06 0.643±0.17 0.654±0.00 N/A 0.978±0.25 1.056±0.00 N/A
ENSMUST00000144716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.00 N/A N/A
ENSMUST00000149714 N/A 0.461±0.00 N/A N/A 1.225±0.00 N/A 0.398±0.14 1.170±0.00 N/A N/A 0.473±0.18 N/A N/A N/A
ENSMUST00000152387 0.779±0.33 N/A N/A N/A 0.962±0.16 1.793±0.77 N/A 0.976±0.15 0.691±0.23 N/A N/A 2.027±0.90 1.887±0.00 2.216±0.39
ENSMUST00000154921 N/A 0.622±0.00 0.701±0.03 0.708±0.09 1.148±0.00 N/A 0.303±0.01 1.202±0.55 1.129±0.32 1.027±0.00 0.227±0.00 1.082±0.53 2.548±1.77 1.667±0.00
ENSMUSG00000088742 ENSMUST00000158117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12748.463±12498.54

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