C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SLIT-ROBO Rho GTPase activating protein 2B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196369 SRGAP2B 9606 - 1:144887265-145095528 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000463366 SRGAP2B-004 145093043-145095526 processed_transcript
  ENST00000467933 SRGAP2B-002 145092987-145094979 processed_transcript
  ENST00000494534 SRGAP2B-003 145093053-145094965 processed_transcript
  ENST00000612199 SRGAP2B-001 144887265-145095528 protein_coding
  ENST00000619678 SRGAP2B-201 144892049-145093246 protein_coding
  ENST00000621582 SRGAP2B-005 144897236-144955446 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000612199ENST00000621582
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000612199 1.091±0.00 0.506±0.00 0.360±0.00 0.971±0.22 0.458±0.16 0.280±0.11 0.183±0.06 0.684±0.62 0.329±0.23 0.845±0.35 0.066±0.02 0.607±0.33 0.893±0.31 0.309±0.03
ENST00000621582 N/A N/A N/A N/A N/A 0.521±0.00 0.308±0.00 0.770±0.00 N/A N/A 0.388±0.00 N/A N/A 1.300±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012Y CIL_00012Y_0002 CGP 1:144887265-145112696

Gene Ontology
GO IDEvidence TypeGO Description
GO:0007399 IEA nervous system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032161 srgap2a SLIT-ROBO Rho GTPase activating protein 2a protein_coding Danio_rerio
ENSMUSG00000026425 Srgap2 SLIT-ROBO Rho GTPase activating protein 2 protein_coding Mus_musculus

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