C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621582 SRGAP2B-005 ENSG00000196369 9606 - 1:144897236-144955446 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyMuscleTestisENST00000621582
Transcript ID Colon Heart Kidney Muscle Testis
ENST00000621582 0.521±0.00 0.308±0.00 0.770±0.00 0.388±0.00 1.300±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012Y CIL_00012Y_0002 CGP 1:144887265-145112696

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185596 Srgap2-005 protein_coding Mus_musculus 0 568
ENSMUST00000186543 Srgap2-004 protein_coding Mus_musculus 0 568
ENSMUST00000097588 Srgap2-001 protein_coding Mus_musculus 0 568
ENSDART00000045391 srgap2a-201 protein_coding Danio_rerio 0 243
ENSDART00000103865 srgap2a-001 protein_coding Danio_rerio 0 243
ENSMUST00000060215 Srgap3-003 retained_intron Mus_musculus 2e-26 122
ENSMUST00000113169 Srgap3-004 protein_coding Mus_musculus 2e-26 122
ENSMUST00000088373 Srgap3-001 protein_coding Mus_musculus 2e-26 122
ENSDART00000048707 srgap2b-201 protein_coding Danio_rerio 1e-23 113
ENSDART00000014897 srgap2b-001 protein_coding Danio_rerio 1e-23 113

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