C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00012Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032161-ENSDARG00000070621 CGP 7955 11:22239998-22431726
GeneTranscriptPositionBiotype
ENSDARG00000032161 (srgap2a)
SLIT-ROBO Rho GTPase activating protein 2a 		ENSDART00000045391 (srgap2a-201) 22239998-22416104 protein_coding
ENSDART00000103865 (srgap2a-001) 22242498-22418377 protein_coding
ENSDART00000138665 (srgap2a-002) 22413127-22418362 processed_transcript
ENSDARG00000070621 (FAM72B)
family with sequence similarity 72, member B 		ENSDART00000091182 (FAM72B-201) 22420047-22431726 protein_coding
ENSDART00000103883 (FAM72B-202) 22419558-22427601 protein_coding
ENSDART00000136265 (FAM72B-001) 22419536-22427601 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00012Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196369-ENSG00000215784 CGP 9606 1:144887265-145112696
GeneTranscriptPositionBiotype
ENSG00000215784 (FAM72D)
family with sequence similarity 72, member D 		ENST00000400889 (FAM72D-001) 145096000-145112696 protein_coding
ENSG00000224363 (RP11-289H16.1)
 ENST00000441760 (RP11-289H16.1-001) 144641371-144919902 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00012Y_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026425-ENSMUSG00000055184 CGP 10090 1:131285251-131539872
GeneTranscriptPositionBiotype
ENSMUSG00000026425 (Srgap2)
SLIT-ROBO Rho GTPase activating protein 2 		ENSMUST00000097588 (Srgap2-001) 131285251-131527347 protein_coding
ENSMUST00000185445 (Srgap2-009) 131411800-131514232 protein_coding
ENSMUST00000185596 (Srgap2-005) 131296641-131364064 protein_coding
ENSMUST00000186543 (Srgap2-004) 131295218-131527347 protein_coding
ENSMUST00000187042 (Srgap2-012) 131289358-131300453 protein_coding
ENSMUST00000187273 (Srgap2-010) 131436675-131504366 protein_coding
ENSMUST00000188437 (Srgap2-011) 131319535-131332263 retained_intron
ENSMUST00000188604 (Srgap2-013) 131295756-131296380 processed_transcript
ENSMUST00000188770 (Srgap2-006) 131295221-131344547 protein_coding
ENSMUST00000189892 (Srgap2-008) 131295219-131311065 processed_transcript
ENSMUST00000189893 (Srgap2-002) 131362026-131527352 retained_intron
ENSMUST00000190336 (Srgap2-007) 131294988-131333070 processed_transcript
ENSMUSG00000055184 (Fam72a)
family with sequence similarity 72, member A 		ENSMUST00000068613 (Fam72a-001) 131527903-131539872 protein_coding
ENSMUSG00000099959 (RP24-302F18.1)
predicted gene 29487 		ENSMUST00000190146 (RP24-302F18.1-001) 131447440-131447695 processed_pseudogene
ENSMUSG00000101778 (RP24-302F18.2)
predicted gene 29488 		ENSMUST00000191427 (RP24-302F18.2-001) 131406812-131409213 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00012Y_0001ENSDARG00000032161ENSDART00000045391ENSDART00000103865ENSDART00000138665ENSDARG00000070621ENSDART00000091182ENSDART00000103883ENSDART00000136265CIL_00012Y_0002ENSG00000215784ENST00000400889ENSG00000224363ENST00000441760CIL_00012Y_0003ENSMUSG00000026425ENSMUST00000097588ENSMUST00000185445ENSMUST00000185596ENSMUST00000186543ENSMUST00000187042ENSMUST00000187273ENSMUST00000188437ENSMUST00000188604ENSMUST00000188770ENSMUST00000189892ENSMUST00000189893ENSMUST00000190336ENSMUSG00000055184ENSMUST00000068613ENSMUSG00000099959ENSMUST00000190146ENSMUSG00000101778ENSMUST00000191427
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00012Y_0001ENSDARG00000032161ENSDART00000045391ENSDART00000103865ENSDARG00000070621ENSDART00000091182ENSDART00000103883CIL_00012Y_0002ENSG00000215784ENST00000400889ENSG00000224363ENST00000441760CIL_00012Y_0003ENSMUSG00000026425ENSMUST00000097588ENSMUST00000186543ENSMUST00000187042ENSMUST00000188770ENSMUSG00000055184ENSMUST00000068613ENSMUSG00000099959ENSMUST00000190146ENSMUSG00000101778ENSMUST00000191427
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000032161 ENSDART00000045391 N/A N/A N/A 7.379±5.82 N/A N/A N/A N/A 0.094±0.00 N/A 1.052±0.00 N/A N/A N/A
ENSDART00000103865 N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A
ENSDART00000138665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070621 ENSDART00000091182 N/A N/A N/A 4.190±0.67 N/A N/A 1.694±0.51 0.882±0.10 0.198±0.00 N/A 0.839±0.00 N/A N/A N/A
ENSDART00000103883 N/A N/A N/A 12.441±12.75 N/A N/A 12.526±7.24 15.111±10.37 N/A N/A 0.446±0.00 N/A N/A N/A
ENSDART00000136265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000215784 ENST00000400889 N/A 0.018±0.00 N/A 0.028±0.00 0.036±0.00 0.035±0.02 0.054±0.00 N/A N/A N/A N/A 0.161±0.03 0.068±0.03 0.105±0.00
ENSG00000224363 ENST00000441760 N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.053±0.00 0.032±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026425 ENSMUST00000097588 2.919±0.03 1.922±0.45 1.094±0.00 3.056±1.05 3.035±1.38 1.427±0.67 1.638±0.49 1.823±0.53 1.104±0.92 5.088±1.36 0.927±0.22 2.904±1.01 3.147±3.37 1.378±0.50
ENSMUST00000185445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186543 3.170±0.00 2.212±0.00 3.478±0.00 9.550±0.00 3.026±1.24 1.304±0.62 1.224±0.00 1.859±0.34 1.482±0.98 3.489±0.00 1.183±0.15 2.667±0.89 7.825±5.62 2.640±1.22
ENSMUST00000187042 N/A 4.019±0.73 N/A N/A N/A 2.377±0.37 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188770 5.823±1.23 4.442±0.48 N/A N/A 4.039±0.54 1.164±0.28 2.509±0.68 2.153±0.19 1.519±0.50 7.518±0.65 1.189±0.19 3.850±1.16 3.709±2.12 1.334±0.14
ENSMUST00000189892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055184 ENSMUST00000068613 0.328±0.02 0.210±0.06 0.333±0.15 0.408±0.39 0.224±0.09 0.129±0.03 0.154±0.05 0.057±0.02 0.769±0.64 0.211±0.08 0.106±0.03 0.297±0.13 0.994±0.71 0.873±0.34
ENSMUSG00000099959 ENSMUST00000190146 0.495±0.00 N/A 0.094±0.00 0.152±0.04 0.831±0.36 N/A N/A N/A N/A 0.607±0.00 N/A 0.563±0.00 N/A 0.383±0.00
ENSMUSG00000101778 ENSMUST00000191427 0.069±0.04 N/A 0.045±0.03 0.118±0.09 0.120±0.13 N/A 0.032±0.03 0.047±0.03 0.038±0.01 0.128±0.08 N/A 0.109±0.09 0.077±0.05 0.054±0.03

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