C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196859 KRT39 9606 - 17:40958417-40966892 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355612 KRT39-001 40958417-40966892 protein_coding
  ENST00000578029 KRT39-002 40958500-40960697 retained_intron
  ENST00000578078 KRT39-003 40958462-40966886 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLungPlacentaTestisENST00000355612ENST00000578029
Transcript ID Adrenal Breast Lung Placenta Testis
ENST00000355612 N/A 0.049±0.00 N/A N/A 0.066±0.00
ENST00000578029 0.038±0.00 0.074±0.00 0.118±0.00 0.076±0.00 0.098±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TM CIL_0000TM_0003 CGP 17:40922696-40966892
CIL_00056U CIL_00056U_000P CGP 17:40958417-40987135

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio
ENSMUSG00000064165 Krt39 keratin 39 protein_coding Mus_musculus

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