C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000TM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036830-ENSDARG00000036830 CGP 7955 19:5986769-6004973
GeneTranscriptPositionBiotype
ENSDARG00000036830 (KRT23 (1 of 2))
 ENSDART00000000221 (KRT23 (1 of 2)-001) 6002766-6004973 protein_coding
ENSDART00000105803 (KRT23 (1 of 2)-201) 5986769-6004894 protein_coding
ENSDART00000146890 (KRT23 (1 of 2)-003) 6003796-6004910 nonsense_mediated_decay
ENSDART00000151644 (KRT23 (1 of 2)-002) 6003705-6004502 retained_intron
ENSDARG00000092947 (cyt1)
type I cytokeratin, enveloping layer 		ENSDART00000004812 (cyt1-001) 5986623-5988852 protein_coding
ENSDART00000105806 (cyt1-201) 5986769-5988783 protein_coding
ENSDART00000133032 (cyt1-004) 5987597-5988842 nonsense_mediated_decay
ENSDART00000138392 (cyt1-002) 5986623-5988842 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0000TM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000044973-ENSDARG00000036840 CGP 7955 11:11625390-11764765
GeneTranscriptPositionBiotype
ENSDARG00000019365 (zgc:110712)
zgc:110712 		ENSDART00000136114 (zgc:110712-002) 11687727-11695136 processed_transcript
ENSDART00000142208 (zgc:110712-001) 11687372-11696446 protein_coding
ENSDARG00000036840 (krt15)
keratin 15 		ENSDART00000025016 (krt15-201) 11637240-11764765 protein_coding
ENSDART00000104254 (krt15-001) 11637154-11639845 protein_coding
ENSDARG00000044973 (KRT23 (2 of 2))
 ENSDART00000104264 (KRT23 (2 of 2)-201) 11625390-11635355 protein_coding
ENSDART00000132291 (KRT23 (2 of 2)-002) 11625439-11635361 protein_coding
ENSDART00000133488 (KRT23 (2 of 2)-003) 11625743-11634183 processed_transcript
ENSDART00000134806 (KRT23 (2 of 2)-001) 11625390-11635361 protein_coding
ENSDART00000137449 (KRT23 (2 of 2)-004) 11625637-11634788 processed_transcript
ENSDART00000140421 (KRT23 (2 of 2)-005) 11625390-11634657 retained_intron
ENSDARG00000074508 (HAP1)
huntingtin-associated protein 1 		ENSDART00000112328 (HAP1-201) 11718450-11746419 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000TM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108244-ENSG00000196859 CGP 9606 17:40922696-40966892
GeneTranscriptPositionBiotype
ENSG00000108244 (KRT23)
keratin 23 (histone deacetylase inducible) 		ENST00000209718 (KRT23-001) 40922696-40937420 protein_coding
ENST00000436344 (KRT23-005) 40922700-40937450 protein_coding
ENST00000462312 (KRT23-002) 40922700-40937584 nonsense_mediated_decay
ENST00000485751 (KRT23-004) 40936448-40937486 protein_coding
ENST00000494691 (KRT23-003) 40928238-40937545 nonsense_mediated_decay
ENST00000582283 (KRT23-008) 40936742-40937577 processed_transcript
ENST00000582754 (KRT23-006) 40925161-40936835 retained_intron
ENST00000584517 (KRT23-010) 40929676-40936390 protein_coding
ENST00000585006 (KRT23-009) 40936832-40937634 processed_transcript
ENSG00000196859 (KRT39)
keratin 39 		ENST00000355612 (KRT39-001) 40958417-40966892 protein_coding
ENST00000578029 (KRT39-002) 40958500-40960697 retained_intron
ENST00000578078 (KRT39-003) 40958462-40966886 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0000TM_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171403-ENSG00000186847 CGP 9606 17:41565841-41586921
GeneTranscriptPositionBiotype
ENSG00000171403 (KRT9)
keratin 9 		ENST00000246662 (KRT9-001) 41565841-41572058 protein_coding
ENST00000588431 (KRT9-002) 41566104-41572053 protein_coding
ENSG00000186847 (KRT14)
keratin 14 		ENST00000167586 (KRT14-001) 41582279-41586921 protein_coding
ENST00000441550 (KRT14-002) 41582309-41583455 retained_intron
ENST00000476662 (KRT14-003) 41583249-41584471 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0000TM_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006777-ENSMUSG00000064165 CGP 10090 11:99477974-99521338
GeneTranscriptPositionBiotype
ENSMUSG00000006777 (Krt23)
keratin 23 		ENSMUST00000006969 (Krt23-001) 99477974-99493137 protein_coding
ENSMUSG00000064165 (Krt39)
keratin 39 		ENSMUST00000076948 (Krt39-201) 99514624-99521258 protein_coding
ENSMUST00000107445 (Krt39-001) 99514114-99521338 protein_coding

Mus musculus Ensembl (GRCm38)

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CIL_0000TM_0006 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051617-ENSMUSG00000045545 CGP 10090 11:100186781-100207548
GeneTranscriptPositionBiotype
ENSMUSG00000045545 (Krt14)
keratin 14 		ENSMUST00000007272 (Krt14-001) 100203162-100207548 protein_coding
ENSMUST00000137265 (Krt14-002) 100203162-100206030 processed_transcript
ENSMUSG00000051617 (Krt9)
keratin 9 		ENSMUST00000059707 (Krt9-001) 100186781-100193246 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TM_0001ENSDARG00000036830ENSDART00000000221ENSDART00000105803ENSDART00000146890ENSDART00000151644ENSDARG00000092947ENSDART00000004812ENSDART00000105806ENSDART00000133032ENSDART00000138392CIL_0000TM_0002ENSDARG00000019365ENSDART00000136114ENSDART00000142208ENSDARG00000036840ENSDART00000025016ENSDART00000104254ENSDARG00000044973ENSDART00000104264ENSDART00000132291ENSDART00000133488ENSDART00000134806ENSDART00000137449ENSDART00000140421ENSDARG00000074508ENSDART00000112328CIL_0000TM_0003ENSG00000108244ENST00000209718ENST00000436344ENST00000462312ENST00000485751ENST00000494691ENST00000582283ENST00000582754ENST00000584517ENST00000585006ENSG00000196859ENST00000355612ENST00000578029ENST00000578078CIL_0000TM_0004ENSG00000171403ENST00000246662ENST00000588431ENSG00000186847ENST00000167586ENST00000441550ENST00000476662CIL_0000TM_0005ENSMUSG00000006777ENSMUST00000006969ENSMUSG00000064165ENSMUST00000076948ENSMUST00000107445CIL_0000TM_0006ENSMUSG00000045545ENSMUST00000007272ENSMUST00000137265ENSMUSG00000051617ENSMUST00000059707
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TM_0001ENSDARG00000036830ENSDART00000000221ENSDARG00000092947ENSDART00000004812CIL_0000TM_0002ENSDARG00000019365ENSDART00000136114ENSDART00000142208ENSDARG00000036840ENSDART00000025016ENSDART00000104254ENSDARG00000044973ENSDART00000104264ENSDART00000132291ENSDART00000134806ENSDART00000137449ENSDART00000140421ENSDARG00000074508ENSDART00000112328CIL_0000TM_0003ENSG00000108244ENST00000209718ENST00000436344ENST00000462312ENST00000494691ENST00000582754ENST00000584517ENST00000585006ENSG00000196859ENST00000355612ENST00000578029CIL_0000TM_0004ENSG00000171403ENST00000246662ENST00000588431ENSG00000186847ENST00000167586ENST00000441550ENST00000476662CIL_0000TM_0005ENSMUSG00000006777ENSMUST00000006969ENSMUSG00000064165ENSMUST00000076948ENSMUST00000107445CIL_0000TM_0006ENSMUSG00000045545ENSMUST00000007272ENSMUST00000137265ENSMUSG00000051617ENSMUST00000059707
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036830 ENSDART00000000221 N/A N/A N/A 8.678±13.28 N/A N/A 157.946±73.13 42.354±50.83 1.319±0.00 N/A 71.594±0.00 N/A N/A N/A
ENSDART00000105803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000092947 ENSDART00000004812 N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000105806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019365 ENSDART00000136114 N/A N/A N/A 0.102±0.02 N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000142208 N/A N/A N/A 0.051±0.00 N/A N/A 0.079±0.00 0.127±0.00 N/A N/A 0.080±0.00 N/A N/A N/A
ENSDARG00000036840 ENSDART00000025016 N/A N/A N/A 1.545±0.04 N/A N/A 175.335±15.61 12.267±9.79 0.294±0.00 N/A 5.050±0.00 N/A N/A N/A
ENSDART00000104254 N/A N/A N/A 1.150±1.25 N/A N/A 194.961±13.23 30.766±37.93 0.226±0.00 N/A 16.667±0.00 N/A N/A N/A
ENSDARG00000044973 ENSDART00000104264 N/A N/A N/A 0.051±0.00 N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000132291 N/A N/A N/A 0.115±0.06 N/A N/A 0.452±0.15 0.605±0.08 N/A N/A N/A N/A N/A N/A
ENSDART00000133488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134806 N/A N/A N/A N/A N/A N/A 0.114±0.00 0.487±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000137449 N/A N/A N/A 0.062±0.01 N/A N/A 1.637±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140421 N/A N/A N/A N/A N/A N/A N/A 0.781±0.07 N/A N/A N/A N/A N/A N/A
ENSDARG00000074508 ENSDART00000112328 N/A N/A N/A 21.103±4.28 N/A N/A 9.609±2.58 2.343±0.15 0.083±0.00 N/A 3.007±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108244 ENST00000209718 0.270±0.00 N/A N/A N/A 6.177±0.00 0.085±0.00 N/A 0.076±0.00 0.066±0.02 3.637±0.00 N/A 6.108±3.41 82.836±5.36 6.830±0.00
ENST00000436344 0.062±0.00 N/A N/A N/A 0.628±0.26 N/A N/A N/A N/A 0.464±0.00 N/A 17.877±25.01 77.829±0.00 15.366±5.03
ENST00000462312 N/A N/A 0.031±0.00 0.041±0.00 N/A N/A 0.009±0.00 0.104±0.00 0.152±0.00 N/A 0.029±0.00 N/A N/A N/A
ENST00000485751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494691 N/A N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A
ENST00000582283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582754 N/A 0.043±0.00 N/A N/A 0.178±0.00 N/A N/A 0.216±0.00 N/A N/A N/A 15.893±0.00 25.606±0.00 N/A
ENST00000584517 N/A N/A N/A 0.078±0.00 N/A 0.095±0.00 N/A N/A N/A 0.514±0.00 N/A N/A N/A N/A
ENST00000585006 N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000196859 ENST00000355612 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00
ENST00000578029 N/A 0.038±0.00 N/A N/A 0.074±0.00 N/A N/A N/A N/A 0.118±0.00 N/A N/A 0.076±0.00 0.098±0.00
ENST00000578078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171403 ENST00000246662 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A 0.080±0.01 0.168±0.00 N/A
ENST00000588431 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.075±0.00 N/A 0.087±0.00 0.054±0.01 0.121±0.01
ENSG00000186847 ENST00000167586 6.152±0.00 N/A 0.477±0.00 N/A 88.233±80.79 0.025±0.00 N/A 0.385±0.35 N/A 1.411±0.85 0.079±0.00 117.335±140.75 52.133±47.38 0.360±0.00
ENST00000441550 N/A N/A N/A 0.053±0.00 N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A 0.065±0.00
ENST00000476662 N/A N/A N/A 0.075±0.00 61.034±0.00 0.065±0.00 0.062±0.00 0.851±0.00 0.123±0.00 0.394±0.00 0.066±0.00 375.731±496.63 58.245±0.00 0.087±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006777 ENSMUST00000006969 1.467±1.53 0.323±0.00 1.538±0.10 0.022±0.01 2.076±0.44 3.006±0.94 0.426±0.12 1.721±0.28 1.239±1.12 12.891±2.55 0.116±0.06 0.569±0.22 1.838±1.20 0.219±0.09
ENSMUSG00000064165 ENSMUST00000076948 0.137±0.07 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A 0.131±0.08
ENSMUST00000107445 N/A N/A 0.035±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.139±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000045545 ENSMUST00000007272 0.077±0.02 0.066±0.03 0.590±0.21 10.670±1.32 28.026±9.77 0.471±0.18 0.177±0.08 0.538±0.10 0.300±0.16 12.088±11.91 1.542±0.94 0.207±0.10 13.702±16.47 0.402±0.28
ENSMUST00000137265 0.034±0.01 0.073±0.03 N/A N/A N/A 0.313±0.11 0.091±0.03 0.251±0.12 0.092±0.06 0.277±0.00 0.543±0.00 0.125±0.10 6.755±7.35 0.029±0.00
ENSMUSG00000051617 ENSMUST00000059707 0.033±0.02 N/A N/A 2.959±4.15 0.037±0.02 0.029±0.00 0.035±0.00 N/A 0.007±0.00 0.037±0.02 0.039±0.00 0.067±0.02 0.020±0.01 0.016±0.00

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