C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: staphylococcal nuclease and tudor domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197157 SND1 9606 + 7:127652180-128092609 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354725 SND1-001 127652180-128092607 protein_coding
  ENST00000461056 SND1-002 127679045-127698937 processed_transcript
  ENST00000463020 SND1-013 127652194-127687147 retained_intron
  ENST00000465900 SND1-007 127718658-127929227 processed_transcript
  ENST00000467238 SND1-008 127990946-127998076 processed_transcript
  ENST00000468166 SND1-006 127718554-127887949 processed_transcript
  ENST00000468621 SND1-003 127685941-127701213 processed_transcript
  ENST00000470463 SND1-010 128042302-128084759 processed_transcript
  ENST00000470723 SND1-009 127949116-128081412 processed_transcript
  ENST00000483503 SND1-004 127692487-127703191 processed_transcript
  ENST00000484767 SND1-014 127904355-128074622 processed_transcript
  ENST00000485871 SND1-012 128089489-128092207 processed_transcript
  ENST00000486037 SND1-016 127887912-128084850 protein_coding
  ENST00000489417 SND1-011 128086471-128092609 retained_intron
  ENST00000492772 SND1-005 127694692-127703225 processed_transcript
  ENST00000492840 SND1-015 127904626-127990955 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354725ENST00000465900ENST00000468166ENST00000489417ENST00000492772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354725 30.479±0.00 14.498±0.00 5.227±0.00 8.925±2.02 30.345±18.68 20.449±10.75 9.665±4.99 26.982±15.02 18.727±11.40 25.313±15.88 31.779±0.00 52.079±29.39 86.032±25.84 30.406±3.57
ENST00000465900 N/A N/A N/A N/A N/A N/A N/A 12.728±0.00 N/A N/A N/A 78.614±0.00 N/A N/A
ENST00000468166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.125±0.00 N/A N/A N/A
ENST00000489417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.685±0.00 N/A N/A
ENST00000492772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.737±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0001 VISTA 7:127234332-127837492
CIL_0001OG CIL_0001OG_0001 CGP 7:127610292-128092609
CIL_0004Y2 CIL_0004Y2_0002 CGP 7:127652180-128092609

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003712 TAS transcription cofactor activity
GO:0004518 IEA nuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016442 IEA RISC complex
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0031047 IEA gene silencing by RNA
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0097433 IEA dense body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006766 snd1 staphylococcal nuclease domain containing 1 protein_coding Danio_rerio
ENSMUSG00000001424 Snd1 staphylococcal nuclease and tudor domain containing 1 protein_coding Mus_musculus

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