C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: staphylococcal nuclease and tudor domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001424 Snd1 10090 + 6:28475139-28935162 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001460 Snd1-001 28480348-28888832 protein_coding
  ENSMUST00000163772 Snd1-006 28704909-28707087 processed_transcript
  ENSMUST00000164915 Snd1-002 28480348-28877723 nonsense_mediated_decay
  ENSMUST00000165151 Snd1-008 28880043-28886527 retained_intron
  ENSMUST00000166136 Snd1-011 28848907-28880308 processed_transcript
  ENSMUST00000167201 Snd1-003 28480359-28935162 protein_coding
  ENSMUST00000168362 Snd1-004 28475139-28523737 protein_coding
  ENSMUST00000169321 Snd1-007 28705720-28724981 processed_transcript
  ENSMUST00000169579 Snd1-010 28776548-28880233 processed_transcript
  ENSMUST00000171195 Snd1-009 28764690-28874987 processed_transcript
  ENSMUST00000171532 Snd1-005 28561817-28724971 processed_transcript
  ENSMUST00000183161 Snd1-012 28480429-28482848 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001460 33.038±8.88 72.672±16.73 25.640±1.38 22.082±6.64 30.831±10.13 27.658±9.41 11.186±3.31 16.896±2.23 33.682±2.46 29.863±4.34 9.615±0.54 63.430±17.27 62.807±19.01 3.438±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0002 VISTA 6:28095025-28698247
CIL_0001OG CIL_0001OG_0002 CGP 6:28442334-28935162
CIL_0004Y2 CIL_0004Y2_0003 CGP 6:28475139-28935162

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0004518 IEA nuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IEA membrane
GO:0016442 IEA RISC complex
GO:0031047 IEA gene silencing by RNA
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0097433 IDA dense body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006766 snd1 staphylococcal nuclease domain containing 1 protein_coding Danio_rerio
ENSG00000197157 SND1 staphylococcal nuclease and tudor domain containing 1 protein_coding Homo_sapiens

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