C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staphylococcal nuclease and tudor domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354725 SND1-001 ENSG00000197157 9606 + 7:127652180-128092607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354725 30.479±0.00 14.498±0.00 5.227±0.00 8.925±2.02 30.345±18.68 20.449±10.75 9.665±4.99 26.982±15.02 18.727±11.40 25.313±15.88 31.779±0.00 52.079±29.39 86.032±25.84 30.406±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0001 VISTA 7:127234332-127837492
CIL_0001OG CIL_0001OG_0001 CGP 7:127610292-128092609
CIL_0004Y2 CIL_0004Y2_0002 CGP 7:127652180-128092609

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0003712 TAS transcription cofactor activity
GO:0004518 IEA nuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016442 IEA RISC complex
GO:0031047 IEA gene silencing by RNA
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0097433 IEA dense body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001460 Snd1-001 protein_coding Mus_musculus 0 3849
ENSMUST00000167201 Snd1-003 protein_coding Mus_musculus 0 2484
ENSMUST00000164915 Snd1-002 nonsense_mediated_decay Mus_musculus 0 2004
ENSMUST00000165151 Snd1-008 retained_intron Mus_musculus 0 758
ENSMUST00000171532 Snd1-005 processed_transcript Mus_musculus 0 540
ENSMUST00000169579 Snd1-010 processed_transcript Mus_musculus 0 416
ENSMUST00000168362 Snd1-004 protein_coding Mus_musculus 0 390
ENSMUST00000166136 Snd1-011 processed_transcript Mus_musculus 0 368
ENSMUST00000169321 Snd1-007 processed_transcript Mus_musculus 0 252
ENSMUST00000183161 Snd1-012 retained_intron Mus_musculus 0 209

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