C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group nucleosome binding domain 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198157 HMGN5 9606 - X:81113701-81201942 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358130 HMGN5-001 81113701-81201942 protein_coding
  ENST00000373250 HMGN5-007 81114985-81121638 protein_coding
  ENST00000430960 HMGN5-006 81115054-81121683 protein_coding
  ENST00000436386 HMGN5-002 81115192-81201913 protein_coding
  ENST00000447319 HMGN5-004 81114835-81121688 protein_coding
  ENST00000451455 HMGN5-003 81116204-81201886 protein_coding
  ENST00000491275 HMGN5-005 81115111-81121688 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358130ENST00000373250ENST00000430960ENST00000436386ENST00000447319ENST00000451455ENST00000491275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358130 N/A N/A N/A 0.767±0.00 N/A 1.789±1.70 N/A N/A 0.059±0.00 0.023±0.00 N/A 0.960±0.00 0.096±0.01 8.663±3.16
ENST00000373250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.448±0.00 N/A N/A N/A
ENST00000430960 N/A N/A 0.383±0.00 N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A 0.843±0.59 0.120±0.00 9.084±0.00
ENST00000436386 N/A N/A N/A N/A N/A 0.690±0.00 0.106±0.00 N/A 0.130±0.00 N/A N/A N/A 0.249±0.00 N/A
ENST00000447319 1.835±0.00 2.749±0.00 N/A N/A 3.498±0.00 4.540±0.00 0.629±0.00 N/A N/A 1.845±0.00 N/A N/A 0.070±0.00 2.659±0.00
ENST00000451455 N/A N/A N/A N/A 0.485±0.00 N/A N/A 0.515±0.00 N/A N/A N/A 0.369±0.00 0.274±0.07 N/A
ENST00000491275 N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KC CIL_0003KC_0001 CGP X:80670854-81201942
CIL_0003K8 CIL_0003K8_0001 CGP X:81113701-81298547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003682 NAS chromatin binding
GO:0005634 IDA:IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0045893 NAS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000031245 Hmgn5 high-mobility group nucleosome binding domain 5 protein_coding Mus_musculus

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