C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosome binding domain 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447319 HMGN5-004 ENSG00000198157 9606 - X:81114835-81121688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLungPlacentaTestisENST00000447319
Transcript ID Adipose Adrenal Breast Colon Heart Lung Placenta Testis
ENST00000447319 1.835±0.00 2.749±0.00 3.498±0.00 4.540±0.00 0.629±0.00 1.845±0.00 0.070±0.00 2.659±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KC CIL_0003KC_0001 CGP X:80670854-81201942
CIL_0003K8 CIL_0003K8_0001 CGP X:81113701-81298547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0031492 IEA nucleosomal DNA binding
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033597 Hmgn5-001 protein_coding Mus_musculus 0 195
ENSMUST00000117094 Gm11914-001 processed_pseudogene Mus_musculus 0 200

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