C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosome binding domain 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358130 HMGN5-001 ENSG00000198157 9606 - X:81113701-81201942 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverLungOvaryPlacentaTestisENST00000358130
Transcript ID Brain Colon Liver Lung Ovary Placenta Testis
ENST00000358130 0.767±0.00 1.789±1.70 0.059±0.00 0.023±0.00 0.960±0.00 0.096±0.01 8.663±3.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KC CIL_0003KC_0001 CGP X:80670854-81201942
CIL_0003K8 CIL_0003K8_0001 CGP X:81113701-81298547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003682 NAS chromatin binding
GO:0005634 IDA:IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0045893 NAS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033597 Hmgn5-001 protein_coding Mus_musculus 0 372
ENSMUST00000117094 Gm11914-001 processed_pseudogene Mus_musculus 0 267

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