C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L23a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198242 RPL23A 9606 + 17:28719393-28724359 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355731 RPL23A-003 28720299-28723992 protein_coding
  ENST00000394935 RPL23A-004 28720264-28723933 protein_coding
  ENST00000394938 RPL23A-009 28720244-28723936 protein_coding
  ENST00000422514 RPL23A-001 28719393-28724359 protein_coding
  ENST00000472628 RPL23A-006 28720569-28723936 protein_coding
  ENST00000496182 RPL23A-002 28720079-28723936 protein_coding
  ENST00000578181 RPL23A-011 28720705-28723800 protein_coding
  ENST00000580755 RPL23A-010 28723300-28723937 retained_intron
  ENST00000582736 RPL23A-008 28719991-28721261 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355731ENST00000394935ENST00000394938ENST00000422514ENST00000472628ENST00000496182ENST00000582736
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355731 153.142±0.00 214.576±0.00 21.146±0.00 37.073±9.47 71.108±6.19 136.289±55.70 40.301±0.00 30.816±13.72 81.924±0.00 74.787±0.00 34.735±0.00 311.296±310.86 412.556±295.27 74.331±54.65
ENST00000394935 106.388±0.00 173.711±0.00 N/A 44.524±0.00 60.693±30.90 112.275±92.67 22.437±9.02 87.215±46.03 74.548±47.33 331.629±0.00 182.267±152.14 117.402±76.54 139.124±0.00 72.081±45.47
ENST00000394938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.688±0.00
ENST00000422514 N/A N/A N/A 7.788±2.92 N/A N/A N/A 21.510±0.00 9.928±0.00 29.185±0.00 N/A 29.723±15.70 N/A N/A
ENST00000472628 N/A N/A 8.579±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496182 N/A N/A N/A N/A N/A N/A 86.995±0.00 N/A N/A N/A N/A 144.204±75.44 N/A N/A
ENST00000582736 185.953±0.00 237.563±0.00 14.297±0.00 32.532±9.85 94.727±12.07 98.192±56.07 30.574±0.00 52.999±0.00 65.847±0.00 49.143±0.00 56.352±8.49 101.575±0.00 N/A 96.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DE CIL_0000DE_0002 CGP 17:28714284-28724359
CIL_0004ZJ CIL_0004ZJ_0002 CGP 17:28719393-28727935

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008283 IMP cell proliferation
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0031932 ISS TORC2 complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006316 rpl23a ribosomal protein L23a protein_coding Danio_rerio
ENSMUSG00000078126 Rpl23a-ps3 ribosomal protein L23A, pseudogene 3 protein_coding Mus_musculus

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