C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422514 RPL23A-001 ENSG00000198242 9606 + 17:28719393-28724359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverLungOvaryENST00000422514
Transcript ID Brain Kidney Liver Lung Ovary
ENST00000422514 7.788±2.92 21.510±0.00 9.928±0.00 29.185±0.00 29.723±15.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DE CIL_0000DE_0002 CGP 17:28714284-28724359
CIL_0004ZJ CIL_0004ZJ_0002 CGP 17:28719393-28727935

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008283 IMP cell proliferation
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0031932 ISS TORC2 complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 660
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 641
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 604
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 575
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 562
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000118798 Gm7312-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 436
ENSMUST00000121008 Rpl23a-ps4-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000187124 RP23-466F9.2-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000105172 Gm6096-201 protein_coding Mus_musculus 0 379
ENSMUST00000191583 Rpl23a-ps11-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000188369 Rpl23a-ps9-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000187903 RP23-349I9.24-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000187984 RP23-349I9.11-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000185244 RP23-349I9.15-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000186898 RP23-466F9.4-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000185511 Rpl23a-ps10-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000120350 Rpl23a-ps13-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000118608 Gm11935-001 processed_pseudogene Mus_musculus 5e-33 147

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