C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000582736 RPL23A-008 ENSG00000198242 9606 + 17:28719991-28721261 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000582736
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000582736 185.953±0.00 237.563±0.00 14.297±0.00 32.532±9.85 94.727±12.07 98.192±56.07 30.574±0.00 52.999±0.00 65.847±0.00 49.143±0.00 56.352±8.49 101.575±0.00 96.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DE CIL_0000DE_0002 CGP 17:28714284-28724359
CIL_0004ZJ CIL_0004ZJ_0002 CGP 17:28719393-28727935

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 307
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 289
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 259
ENSMUST00000118798 Gm7312-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 252
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 246
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 1e-24 117
ENSMUST00000105172 Gm6096-201 protein_coding Mus_musculus 8e-22 108

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