C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 2 (beta)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471212 TPM2-003 ENSG00000198467 9606 - 9:35684251-35689900 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLungOvaryENST00000471212
Transcript ID Bladder Breast Colon Kidney Lung Ovary
ENST00000471212 2.641±0.00 21.073±0.00 13.547±0.00 0.751±0.00 2.833±0.00 36.119±36.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BY CIL_0007BY_0001 CGP 9:35673856-35691020
CIL_0007BX CIL_0007BX_0001 CGP 9:35681992-35732395

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150262 Tpm2-003 processed_transcript Mus_musculus 0 1280
ENSMUST00000107914 Tpm2-001 protein_coding Mus_musculus 0 989
ENSMUST00000030184 Tpm2-002 protein_coding Mus_musculus 0 989
ENSMUST00000107913 Tpm2-201 protein_coding Mus_musculus 0 865
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 531
ENSMUST00000150592 Tpm2-004 protein_coding Mus_musculus 0 501
ENSDART00000140580 tpm2-003 protein_coding Danio_rerio 0 477
ENSDART00000098875 tpm2-001 protein_coding Danio_rerio 0 477
ENSDART00000125892 TPM1-204 protein_coding Danio_rerio 0 464
ENSMUST00000030185 Tpm1-002 protein_coding Mus_musculus 0 448
ENSMUST00000113687 Tpm1-012 protein_coding Mus_musculus 0 448
ENSMUST00000050905 Tpm1-004 protein_coding Mus_musculus 0 448
ENSMUST00000113685 Tpm1-003 protein_coding Mus_musculus 0 448
ENSMUST00000113693 Tpm1-011 protein_coding Mus_musculus 0 448
ENSMUST00000113697 Tpm1-006 protein_coding Mus_musculus 0 448
ENSMUST00000113707 Tpm1-001 protein_coding Mus_musculus 0 448
ENSMUST00000131279 Tpm1-018 processed_transcript Mus_musculus 0 418
ENSMUST00000129466 Tpm1-019 retained_intron Mus_musculus 0 412
ENSDART00000014851 TPM1-203 protein_coding Danio_rerio 0 355
ENSMUST00000034928 Tpm1-008 protein_coding Mus_musculus 0 337
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 0 329
ENSMUST00000113701 Tpm1-010 protein_coding Mus_musculus 0 320
ENSMUST00000113705 Tpm1-007 protein_coding Mus_musculus 0 320
ENSDART00000121680 TPM1-202 protein_coding Danio_rerio 0 320
ENSMUST00000129733 Tpm1-009 nonsense_mediated_decay Mus_musculus 0 318
ENSDART00000131098 TPM1-201 protein_coding Danio_rerio 0 309
ENSMUST00000113684 Tpm1-020 protein_coding Mus_musculus 0 272
ENSMUST00000113686 Tpm1-014 protein_coding Mus_musculus 0 272
ENSMUST00000113689 Tpm1-021 protein_coding Mus_musculus 0 272
ENSMUST00000113690 Tpm1-013 protein_coding Mus_musculus 0 272
ENSMUST00000113695 Tpm1-016 protein_coding Mus_musculus 0 272
ENSMUST00000113696 Tpm1-015 protein_coding Mus_musculus 0 272
ENSMUST00000133355 Tpm2-005 processed_transcript Mus_musculus 0 261

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