C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 2 (beta)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378292 TPM2-001 ENSG00000198467 9606 - 9:35681992-35691020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000378292
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000378292 73.870±0.00 177.410±0.00 2.187±0.00 9.261±7.84 34.404±0.00 592.354±542.54 7.096±0.00 37.146±35.83 73.278±70.50 62.066±56.67 162.611±142.16 98.451±25.28 171.067±132.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BY CIL_0007BY_0001 CGP 9:35673856-35691020
CIL_0007BX CIL_0007BX_0001 CGP 9:35681992-35732395

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006936 TAS muscle contraction
GO:0008307 TAS structural constituent of muscle
GO:0030049 TAS muscle filament sliding
GO:0043462 IDA regulation of ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107914 Tpm2-001 protein_coding Mus_musculus 0 1454
ENSMUST00000030184 Tpm2-002 protein_coding Mus_musculus 0 1175
ENSMUST00000107913 Tpm2-201 protein_coding Mus_musculus 0 992
ENSMUST00000150262 Tpm2-003 processed_transcript Mus_musculus 0 989
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 573
ENSMUST00000113697 Tpm1-006 protein_coding Mus_musculus 0 542
ENSDART00000098875 tpm2-001 protein_coding Danio_rerio 0 520
ENSDART00000125892 TPM1-204 protein_coding Danio_rerio 0 520
ENSMUST00000050905 Tpm1-004 protein_coding Mus_musculus 0 518
ENSMUST00000113707 Tpm1-001 protein_coding Mus_musculus 0 508
ENSMUST00000150592 Tpm2-004 protein_coding Mus_musculus 0 501
ENSMUST00000030185 Tpm1-002 protein_coding Mus_musculus 0 484
ENSMUST00000113687 Tpm1-012 protein_coding Mus_musculus 0 484
ENSMUST00000113685 Tpm1-003 protein_coding Mus_musculus 0 484
ENSMUST00000113693 Tpm1-011 protein_coding Mus_musculus 0 484
ENSDART00000140580 tpm2-003 protein_coding Danio_rerio 0 477
ENSMUST00000131279 Tpm1-018 processed_transcript Mus_musculus 0 418
ENSDART00000014851 TPM1-203 protein_coding Danio_rerio 0 418
ENSMUST00000113701 Tpm1-010 protein_coding Mus_musculus 0 414
ENSMUST00000129466 Tpm1-019 retained_intron Mus_musculus 0 412
ENSMUST00000034928 Tpm1-008 protein_coding Mus_musculus 0 398
ENSDART00000121680 TPM1-202 protein_coding Danio_rerio 0 383
ENSMUST00000113705 Tpm1-007 protein_coding Mus_musculus 0 381
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 0 372
ENSMUST00000113696 Tpm1-015 protein_coding Mus_musculus 0 366
ENSDART00000131098 TPM1-201 protein_coding Danio_rerio 0 355
ENSMUST00000113684 Tpm1-020 protein_coding Mus_musculus 0 342
ENSMUST00000113689 Tpm1-021 protein_coding Mus_musculus 0 342
ENSMUST00000113695 Tpm1-016 protein_coding Mus_musculus 0 333
ENSMUST00000129733 Tpm1-009 nonsense_mediated_decay Mus_musculus 0 318
ENSMUST00000113686 Tpm1-014 protein_coding Mus_musculus 0 309
ENSMUST00000113690 Tpm1-013 protein_coding Mus_musculus 0 309
ENSMUST00000133355 Tpm2-005 processed_transcript Mus_musculus 0 261

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