C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LPS-responsive vesicle trafficking, beach and anchor containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198589 LRBA 9606 - 4:150264531-151015727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357115 LRBA-002 150264659-151015497 protein_coding
  ENST00000502839 LRBA-011 150840540-150848887 protein_coding
  ENST00000503716 LRBA-004 150264659-150581722 processed_transcript
  ENST00000507224 LRBA-008 150314723-151015277 protein_coding
  ENST00000508396 LRBA-012 150683603-150683963 processed_transcript
  ENST00000508606 LRBA-014 150265566-150302711 protein_coding
  ENST00000509835 LRBA-003 150264661-150849537 protein_coding
  ENST00000510157 LRBA-010 150265026-150315634 retained_intron
  ENST00000510413 LRBA-001 150264531-151015267 protein_coding
  ENST00000510841 LRBA-006 151012829-151015727 retained_intron
  ENST00000513021 LRBA-013 150490957-150679667 processed_transcript
  ENST00000514435 LRBA-007 151012805-151015284 retained_intron
  ENST00000515096 LRBA-009 150264659-150311369 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357115ENST00000503716ENST00000507224ENST00000509835ENST00000510157ENST00000510413
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357115 0.491±0.00 N/A 1.421±0.00 0.620±0.00 0.503±0.00 4.293±0.00 0.673±0.00 N/A 0.946±0.28 1.237±0.00 N/A 0.439±0.00 N/A 0.869±0.00
ENST00000503716 N/A N/A N/A N/A N/A 2.584±0.00 N/A 2.550±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507224 N/A N/A 8.927±0.00 2.659±0.00 5.504±0.00 9.483±0.00 1.316±0.00 2.326±0.00 7.318±0.00 5.458±0.00 1.169±0.00 4.109±0.00 N/A N/A
ENST00000509835 1.871±0.00 2.854±0.00 N/A 1.349±0.39 2.616±0.32 1.938±0.00 1.429±0.58 5.647±0.00 1.170±0.00 2.096±0.00 0.943±0.00 4.058±1.77 1.231±0.91 4.948±0.29
ENST00000510157 1.888±0.00 5.331±0.00 N/A N/A 2.427±0.00 5.545±0.00 N/A 7.519±0.00 N/A N/A N/A N/A N/A 5.170±0.00
ENST00000510413 N/A 0.932±0.00 N/A N/A N/A 0.643±0.00 2.021±0.00 2.271±0.00 N/A N/A 0.747±0.00 1.814±0.00 0.434±0.00 1.479±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VX CIL_0008VX_0001 VISTA 4:149875321-150478147
CIL_00088B CIL_00088B_0001 VISTA 4:150067205-150668217
CIL_000648 CIL_000648_0002 CGP 4:150264531-151015727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005764 IEA lysosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016023 IEA cytoplasmic membrane-bounded vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031108 lrba LPS-responsive vesicle trafficking, beach and anchor containing protein_coding Danio_rerio
ENSMUSG00000028080 Lrba LPS-responsive beige-like anchor protein_coding Mus_musculus

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