C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LPS-responsive vesicle trafficking, beach and anchor containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357115 LRBA-002 ENSG00000198589 9606 - 4:150264659-151015497 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryTestisENST00000357115
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Testis
ENST00000357115 0.491±0.00 1.421±0.00 0.620±0.00 0.503±0.00 4.293±0.00 0.673±0.00 0.946±0.28 1.237±0.00 0.439±0.00 0.869±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VX CIL_0008VX_0001 VISTA 4:149875321-150478147
CIL_00088B CIL_00088B_0001 VISTA 4:150067205-150668217
CIL_000648 CIL_000648_0002 CGP 4:150264531-151015727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005764 IEA lysosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016023 IEA cytoplasmic membrane-bounded vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107635 Lrba-201 protein_coding Mus_musculus 0 7031

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