C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198691 ABCA4 9606 - 1:93992835-94121132 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370225 ABCA4-001 93992837-94121132 protein_coding
  ENST00000460514 ABCA4-004 94019582-94025595 processed_transcript
  ENST00000465352 ABCA4-002 94001508-94010929 processed_transcript
  ENST00000470771 ABCA4-005 94019400-94021367 processed_transcript
  ENST00000472033 ABCA4-003 94059469-94061439 processed_transcript
  ENST00000484388 ABCA4-006 94005375-94007752 processed_transcript
  ENST00000536513 ABCA4-201 93992835-94063249 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000370225ENST00000465352ENST00000470771ENST00000536513
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000370225 0.257±0.00 0.125±0.05 N/A 0.009±0.00 0.010±0.00 0.402±0.00 N/A 0.026±0.00 0.089±0.00 N/A
ENST00000465352 N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A 0.352±0.00
ENST00000470771 N/A N/A N/A N/A N/A N/A N/A 0.162±0.00 N/A N/A
ENST00000536513 0.206±0.00 N/A 0.075±0.00 0.086±0.00 0.047±0.00 0.431±0.00 0.079±0.00 N/A 0.116±0.03 0.170±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DH CIL_0009DH_0001 VISTA 1:93546220-94147690
CIL_0009DJ CIL_0009DJ_0001 VISTA 1:93815311-94417966
CIL_0009DI CIL_0009DI_0001 VISTA 1:93946469-94547443

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0004012 IEA phospholipid-translocating ATPase activity
GO:0005215 TAS transporter activity
GO:0005524 IEA ATP binding
GO:0005548 IEA phospholipid transporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006649 IEA phospholipid transfer to membrane
GO:0006810 TAS:IEA transport
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016020 TAS membrane
GO:0016887 IEA ATPase activity
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0045332 IEA phospholipid translocation
GO:0045494 IEA photoreceptor cell maintenance
GO:0055085 TAS transmembrane transport
GO:0097381 TAS photoreceptor disc membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057169 abca4a ATP-binding cassette, sub-family A (ABC1), member 4a protein_coding Danio_rerio
ENSDARG00000062661 abca4b ATP-binding cassette, sub-family A (ABC1), member 4b protein_coding Danio_rerio
ENSMUSG00000028125 Abca4 ATP-binding cassette, sub-family A (ABC1), member 4 protein_coding Mus_musculus

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