C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536513 ABCA4-201 ENSG00000198691 9606 - 1:93992835-94063249 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLungPlacentaTestisENST00000536513
Transcript ID Bladder Breast Colon Heart Kidney Lung Placenta Testis
ENST00000536513 0.206±0.00 0.075±0.00 0.086±0.00 0.047±0.00 0.431±0.00 0.079±0.00 0.116±0.03 0.170±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DH CIL_0009DH_0001 VISTA 1:93546220-94147690
CIL_0009DJ CIL_0009DJ_0001 VISTA 1:93815311-94417966
CIL_0009DI CIL_0009DI_0001 VISTA 1:93946469-94547443

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000013995 Abca4-001 protein_coding Mus_musculus 0 3502
ENSMUST00000141135 Abca4-004 processed_transcript Mus_musculus 0 3459
ENSMUST00000136358 Abca4-005 retained_intron Mus_musculus 0 398
ENSMUST00000137616 Abca4-011 retained_intron Mus_musculus 0 398
ENSMUST00000144949 Abca4-010 retained_intron Mus_musculus 0 331
ENSMUST00000139239 Abca4-009 processed_transcript Mus_musculus 0 315
ENSDART00000051556 abca1b-201 protein_coding Danio_rerio 6e-40 171
ENSDART00000148461 abca1b-001 protein_coding Danio_rerio 6e-40 171
ENSDART00000131105 protein_coding Danio_rerio 0.000000009 68

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