C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370225 ABCA4-001 ENSG00000198691 9606 - 1:93992837-94121132 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyOvaryPlacentaENST00000370225
Transcript ID Bladder Brain Colon Heart Kidney Ovary Placenta
ENST00000370225 0.257±0.00 0.125±0.05 0.009±0.00 0.010±0.00 0.402±0.00 0.026±0.00 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DH CIL_0009DH_0001 VISTA 1:93546220-94147690
CIL_0009DJ CIL_0009DJ_0001 VISTA 1:93815311-94417966
CIL_0009DI CIL_0009DI_0001 VISTA 1:93946469-94547443

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0004012 IEA phospholipid-translocating ATPase activity
GO:0005215 TAS transporter activity
GO:0005524 IEA ATP binding
GO:0005548 IEA phospholipid transporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006649 IEA phospholipid transfer to membrane
GO:0006810 TAS:IEA transport
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016020 TAS membrane
GO:0016887 IEA ATPase activity
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0045332 IEA phospholipid translocation
GO:0045494 IEA photoreceptor cell maintenance
GO:0055085 TAS transmembrane transport
GO:0097381 TAS photoreceptor disc membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000013995 Abca4-001 protein_coding Mus_musculus 0 7529
ENSMUST00000141135 Abca4-004 processed_transcript Mus_musculus 0 3459
ENSMUST00000132199 Abca4-002 processed_transcript Mus_musculus 0 1622
ENSMUST00000140913 Abca4-006 retained_intron Mus_musculus 0 1074
ENSMUST00000150738 Abca4-003 processed_transcript Mus_musculus 0 863
ENSMUST00000136358 Abca4-005 retained_intron Mus_musculus 0 398
ENSMUST00000137616 Abca4-011 retained_intron Mus_musculus 0 398
ENSMUST00000139239 Abca4-009 processed_transcript Mus_musculus 0 342
ENSMUST00000144949 Abca4-010 retained_intron Mus_musculus 0 331
ENSDART00000051556 abca1b-201 protein_coding Danio_rerio 1e-39 171
ENSDART00000148461 abca1b-001 protein_coding Danio_rerio 1e-39 171
ENSDART00000131105 protein_coding Danio_rerio 0.00000002 68

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