C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 1 open reading frame 85
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198715 C1orf85 9606 - 1:156290089-156295689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000362007 C1orf85-001 156292688-156295672 protein_coding
  ENST00000368264 C1orf85-006 156293423-156295654 nonsense_mediated_decay
  ENST00000461597 C1orf85-009 156290089-156293381 nonsense_mediated_decay
  ENST00000472870 C1orf85-007 156290541-156295654 nonsense_mediated_decay
  ENST00000476177 C1orf85-002 156293373-156295653 nonsense_mediated_decay
  ENST00000479084 C1orf85-003 156293518-156294992 retained_intron
  ENST00000480968 C1orf85-010 156290687-156291506 processed_transcript
  ENST00000481050 C1orf85-012 156292695-156294076 protein_coding
  ENST00000482579 C1orf85-011 156292688-156293667 processed_transcript
  ENST00000484214 C1orf85-005 156293617-156295647 retained_intron
  ENST00000497831 C1orf85-008 156290096-156291550 processed_transcript
  ENST00000497955 C1orf85-004 156293384-156294513 retained_intron
  ENST00000612353 C1orf85-201 156292687-156295689 protein_coding
  ENST00000614643 C1orf85-202 156292687-156295689 protein_coding
  ENST00000622703 C1orf85-203 156292687-156295689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000362007ENST00000461597ENST00000476177ENST00000479084ENST00000480968ENST00000481050ENST00000482579ENST00000484214ENST00000497831ENST00000612353ENST00000622703
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000362007 23.553±0.00 7.725±0.00 N/A 1.682±0.00 10.821±9.88 2.803±0.00 2.957±2.13 12.361±0.00 6.430±5.77 6.563±5.07 N/A 14.433±9.39 46.110±12.18 4.059±1.71
ENST00000461597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.00
ENST00000476177 N/A N/A N/A N/A N/A N/A N/A N/A 0.574±0.00 N/A N/A N/A N/A N/A
ENST00000479084 N/A N/A N/A N/A N/A 0.710±0.00 N/A N/A N/A N/A 0.385±0.00 N/A N/A N/A
ENST00000480968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.209±0.00 N/A N/A N/A
ENST00000481050 N/A 12.430±0.00 N/A N/A N/A N/A N/A 12.103±0.00 10.829±0.00 N/A 1.464±0.00 24.319±0.00 23.820±0.00 N/A
ENST00000482579 N/A N/A N/A N/A N/A 1.595±0.00 N/A N/A N/A N/A N/A 3.636±0.00 N/A N/A
ENST00000484214 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.587±0.00 N/A N/A N/A N/A
ENST00000497831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.807±0.00
ENST00000612353 N/A N/A 1.551±0.00 N/A N/A N/A N/A 1.511±0.00 N/A N/A 1.493±0.00 3.479±0.61 N/A N/A
ENST00000622703 N/A 5.860±0.00 N/A 1.620±0.49 N/A 7.311±0.00 2.535±0.00 4.627±1.80 6.080±0.00 N/A 1.939±0.00 12.359±7.33 16.882±0.55 6.525±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_0000CY CIL_0000CY_0002 CGP 1:156282935-156295689

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0004879 IMP ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IDA nucleus
GO:0005764 IDA lysosome
GO:0005829 IDA cytosol
GO:0016021 ISS integral component of membrane
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030522 IMP intracellular receptor signaling pathway
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059354 C19H1orf85 chromosome 1 open reading frame 85 protein_coding Danio_rerio
ENSMUSG00000001418 0610031J06Rik glycosylated lysosomal membrane protein protein_coding Mus_musculus

Loading