C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SPARC related modular calcium binding 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198732 SMOC1 9606 + 14:69854131-70032366 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361956 SMOC1-001 69879416-70030727 protein_coding
  ENST00000381280 SMOC1-002 69879426-70032366 protein_coding
  ENST00000553839 SMOC1-003 69952137-69978088 retained_intron
  ENST00000555917 SMOC1-005 69854131-69952303 processed_transcript
  ENST00000557483 SMOC1-004 69994239-70011568 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361956ENST00000381280ENST00000557483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361956 1.823±0.00 0.826±0.00 N/A 0.936±0.00 N/A 0.112±0.00 0.455±0.00 2.513±0.00 9.549±0.00 0.302±0.00 1.790±0.00 3.941±4.47 6.903±1.71 9.790±0.00
ENST00000381280 1.175±0.00 N/A 0.222±0.00 12.011±10.94 0.587±0.49 0.080±0.00 0.122±0.07 3.274±2.92 25.846±0.00 N/A 0.028±0.00 5.144±4.55 2.737±0.70 12.072±0.66
ENST00000557483 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.386±0.00 N/A 27.008±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0001 CGP 14:69775417-70032366
CIL_0002M6 CIL_0002M6_0001 CGP 14:69854131-70189070

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001654 IMP eye development
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0007165 IEA signal transduction
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0030154 IEA cell differentiation
GO:0030198 IEA extracellular matrix organization
GO:0045667 IMP regulation of osteoblast differentiation
GO:0050840 IEA extracellular matrix binding
GO:0060173 IMP limb development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088255 SMOC1 (1 of 2) SPARC related modular calcium binding 1 protein_coding Danio_rerio
ENSDARG00000089188 SMOC1 (2 of 2) SPARC related modular calcium binding 1 protein_coding Danio_rerio
ENSMUSG00000021136 Smoc1 SPARC related modular calcium binding 1 protein_coding Mus_musculus

Loading