C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPARC related modular calcium binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361956 SMOC1-001 ENSG00000198732 9606 + 14:69879416-70030727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361956
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361956 1.823±0.00 0.826±0.00 0.936±0.00 0.112±0.00 0.455±0.00 2.513±0.00 9.549±0.00 0.302±0.00 1.790±0.00 3.941±4.47 6.903±1.71 9.790±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0001 CGP 14:69775417-70032366
CIL_0002M6 CIL_0002M6_0001 CGP 14:69854131-70189070

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 IMP eye development
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0007165 IEA signal transduction
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0030154 IEA cell differentiation
GO:0030198 IEA extracellular matrix organization
GO:0045667 IMP regulation of osteoblast differentiation
GO:0050840 IEA extracellular matrix binding
GO:0060173 IMP limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129362 Smoc1-003 protein_coding Mus_musculus 0 2104
ENSMUST00000021564 Smoc1-002 protein_coding Mus_musculus 0 1746
ENSMUST00000110347 Smoc1-001 protein_coding Mus_musculus 0 974
ENSMUST00000024660 Smoc2-201 protein_coding Mus_musculus 1e-20 106

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