C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPARC related modular calcium binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381280 SMOC1-002 ENSG00000198732 9606 + 14:69879426-70032366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000381280
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000381280 1.175±0.00 0.222±0.00 12.011±10.94 0.587±0.49 0.080±0.00 0.122±0.07 3.274±2.92 25.846±0.00 0.028±0.00 5.144±4.55 2.737±0.70 12.072±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0001 CGP 14:69775417-70032366
CIL_0002M6 CIL_0002M6_0001 CGP 14:69854131-70189070

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 IMP eye development
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction
GO:0030154 IEA cell differentiation
GO:0045667 IMP regulation of osteoblast differentiation
GO:0060173 IMP limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129362 Smoc1-003 protein_coding Mus_musculus 0 2089
ENSMUST00000021564 Smoc1-002 protein_coding Mus_musculus 0 1748
ENSMUST00000110347 Smoc1-001 protein_coding Mus_musculus 0 976
ENSMUST00000024660 Smoc2-201 protein_coding Mus_musculus 5e-21 108

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