C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SPARC related modular calcium binding 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021136 Smoc1 10090 + 12:81026808-81186414 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021564 Smoc1-002 81026828-81186410 protein_coding
  ENSMUST00000110347 Smoc1-001 81026808-81186414 protein_coding
  ENSMUST00000129362 Smoc1-003 81026828-81186410 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021564ENSMUST00000110347ENSMUST00000129362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021564 45.850±20.65 N/A 3.794±0.17 9.095±3.26 17.230±5.88 0.766±0.00 2.395±0.57 0.740±0.11 10.222±4.18 1.503±0.51 0.360±0.17 17.174±12.53 11.540±6.71 1.497±0.54
ENSMUST00000110347 6.378±1.59 88.171±57.18 0.654±0.10 3.038±0.24 20.214±5.67 0.976±0.36 0.564±0.13 0.455±0.22 6.479±4.82 1.161±0.71 0.236±0.10 19.414±9.51 4.882±3.17 N/A
ENSMUST00000129362 N/A N/A N/A N/A 11.400±4.37 0.389±0.19 0.769±0.41 0.734±0.25 6.932±0.00 0.970±0.16 0.210±0.00 13.803±4.50 N/A 1.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0002 CGP 12:80953185-81186414
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001654 IMP eye development
GO:0005509 IEA calcium ion binding
GO:0005604 IDA basement membrane
GO:0007165 IEA signal transduction
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030154 IEA cell differentiation
GO:0030198 IDA extracellular matrix organization
GO:0045667 IEA regulation of osteoblast differentiation
GO:0050840 IDA extracellular matrix binding
GO:0060173 IMP limb development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088255 SMOC1 (1 of 2) SPARC related modular calcium binding 1 protein_coding Danio_rerio
ENSDARG00000089188 SMOC1 (2 of 2) SPARC related modular calcium binding 1 protein_coding Danio_rerio
ENSG00000198732 SMOC1 SPARC related modular calcium binding 1 protein_coding Homo_sapiens

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