C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L10a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198755 RPL10A 9606 + 6:35468408-35470785 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322203 RPL10A-001 35468408-35470785 protein_coding
  ENST00000464112 RPL10A-002 35468420-35470785 processed_transcript
  ENST00000467020 RPL10A-005 35468408-35470785 processed_transcript
  ENST00000478340 RPL10A-004 35468420-35470785 processed_transcript
  ENST00000490335 RPL10A-003 35468420-35470640 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322203ENST00000490335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322203 259.598±0.00 352.543±0.00 28.338±0.00 80.752±23.04 148.468±34.12 292.582±166.78 64.426±37.40 189.601±104.09 144.916±3.63 236.184±164.42 180.425±100.05 769.397±681.75 734.610±204.95 140.573±43.34
ENST00000490335 83.023±0.00 112.644±0.00 N/A 42.499±0.00 75.090±0.00 147.924±0.00 24.381±0.00 N/A 47.647±0.00 172.995±0.00 110.525±0.00 698.353±0.00 487.805±0.00 132.150±49.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002L9 CIL_0002L9_0002 CGP 6:35452361-35470785
CIL_0002EP CIL_0002EP_0001 CGP 6:35468408-35497076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0009653 TAS anatomical structure morphogenesis
GO:0010467 TAS gene expression
GO:0015934 IEA large ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042905 rpl10a ribosomal protein L10a protein_coding Danio_rerio
ENSMUSG00000037805 Rpl10a ribosomal protein L10A protein_coding Mus_musculus

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