C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L10a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490335 RPL10A-003 ENSG00000198755 9606 + 6:35468420-35470640 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000490335
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000490335 83.023±0.00 112.644±0.00 42.499±0.00 75.090±0.00 147.924±0.00 24.381±0.00 47.647±0.00 172.995±0.00 110.525±0.00 698.353±0.00 487.805±0.00 132.150±49.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002L9 CIL_0002L9_0002 CGP 6:35452361-35470785
CIL_0002EP CIL_0002EP_0001 CGP 6:35468408-35497076

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120360 Rpl10a-ps1-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000042334 Rpl10a-001 protein_coding Mus_musculus 0 544
ENSMUST00000129935 Rpl10a-002 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000116410 Gm13573-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000071184 Rpl10a-ps2-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000150103 Rpl10a-005 retained_intron Mus_musculus 0 390
ENSMUST00000141049 Rpl10a-007 retained_intron Mus_musculus 0 270
ENSMUST00000128758 Rpl10a-006 retained_intron Mus_musculus 1.99965e-42 176
ENSMUST00000143443 Rpl10a-004 retained_intron Mus_musculus 3.00004e-41 172
ENSMUST00000152665 Rpl10a-003 retained_intron Mus_musculus 8e-32 141

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