C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L10A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037805 Rpl10a 10090 + 17:28328471-28331032 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042334 Rpl10a-001 28328471-28331032 protein_coding
  ENSMUST00000128758 Rpl10a-006 28328583-28329638 retained_intron
  ENSMUST00000129935 Rpl10a-002 28328584-28331032 nonsense_mediated_decay
  ENSMUST00000141049 Rpl10a-007 28329278-28331027 retained_intron
  ENSMUST00000143443 Rpl10a-004 28328647-28329522 retained_intron
  ENSMUST00000150103 Rpl10a-005 28328811-28330697 retained_intron
  ENSMUST00000152665 Rpl10a-003 28328610-28329395 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042334ENSMUST00000128758ENSMUST00000141049ENSMUST00000152665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042334 369.048±154.74 452.013±80.64 808.825±24.54 329.483±191.89 429.714±160.75 680.134±159.55 155.578±54.77 484.023±65.03 609.796±412.72 349.341±53.86 144.458±10.93 850.158±514.25 455.056±319.24 97.455±44.56
ENSMUST00000128758 112.717±4.93 56.665±6.47 N/A N/A 78.595±12.73 80.608±11.73 N/A N/A 65.273±67.55 N/A N/A 119.012±7.54 N/A 19.427±1.44
ENSMUST00000141049 N/A N/A N/A N/A 11.830±0.00 N/A N/A N/A N/A N/A N/A 11.952±0.49 N/A N/A
ENSMUST00000152665 N/A 226.509±89.28 N/A 184.717±0.00 N/A N/A N/A N/A N/A N/A N/A 1034.740±0.00 446.661±220.50 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002L9 CIL_0002L9_0003 CGP 17:28313530-28331032
CIL_0002EP CIL_0002EP_0002 CGP 17:28328471-28350805

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042905 rpl10a ribosomal protein L10a protein_coding Danio_rerio
ENSG00000198755 RPL10A ribosomal protein L10a protein_coding Homo_sapiens

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