C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198807 PAX9 9606 + 14:36657568-36679715 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361487 PAX9-001 36661865-36679715 protein_coding
  ENST00000402703 PAX9-201 36657568-36677804 protein_coding
  ENST00000553267 PAX9-004 36657568-36662008 processed_transcript
  ENST00000554201 PAX9-002 36662574-36676406 protein_coding
  ENST00000555639 PAX9-005 36657671-36663143 processed_transcript
  ENST00000557107 PAX9-003 36665990-36676355 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungMuscleOvaryPlacentaENST00000361487ENST00000402703ENST00000554201ENST00000555639
Transcript ID Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENST00000361487 0.028±0.00 N/A N/A N/A 0.116±0.00 N/A N/A N/A
ENST00000402703 N/A 0.158±0.00 N/A 0.233±0.00 0.859±0.51 0.032±0.00 1.446±1.30 0.047±0.00
ENST00000554201 N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A
ENST00000555639 N/A N/A N/A N/A N/A N/A 1.602±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XR CIL_0008XR_0001 VISTA 14:36124115-36725121
CIL_0008R1 CIL_0008R1_0001 VISTA 14:36138356-36739990
CIL_00091S CIL_00091S_0001 VISTA 14:36141957-36745155
CIL_0007TC CIL_0007TC_0001 VISTA 14:36163945-36765327
CIL_0007XY CIL_0007XY_0001 VISTA 14:36204570-36805380
CIL_0007LS CIL_0007LS_0002 UCNEbase 14:36362793-37516218
CIL_00045C CIL_00045C_0001 CGP 14:36580579-36679715
CIL_0000OF CIL_0000OF_0001 CGP 14:36657568-37172866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007492 IEA endoderm development
GO:0042476 IEA odontogenesis
GO:0042481 IEA regulation of odontogenesis
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060325 IEA face morphogenesis
GO:0071363 IEA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053829 pax9 paired box gene 9 protein_coding Danio_rerio
ENSMUSG00000001497 Pax9 paired box 9 protein_coding Mus_musculus

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