C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001497 Pax9 10090 + 12:56691767-56712822 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001538 Pax9-201 56695639-56712822 protein_coding
  ENSMUST00000152848 Pax9-002 56695729-56710346 retained_intron
  ENSMUST00000153250 Pax9-001 56691767-56712707 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENSMUST00000001538ENSMUST00000152848ENSMUST00000153250
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000001538 0.008±0.00 0.014±0.00 0.024±0.01 0.023±0.00 0.096±0.02 0.099±0.08 1.152±1.01 0.011±0.00 0.006±0.00 0.101±0.01 0.429±0.00
ENSMUST00000152848 N/A 0.016±0.00 0.028±0.00 0.042±0.03 0.026±0.01 0.055±0.01 2.308±2.15 0.021±0.01 0.044±0.02 N/A 2.945±0.80
ENSMUST00000153250 N/A N/A N/A N/A N/A 0.007±0.00 0.096±0.00 0.011±0.00 0.008±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_0008XR CIL_0008XR_0002 VISTA 12:56140796-56741827
CIL_0008R1 CIL_0008R1_0002 VISTA 12:56154748-56756277
CIL_00091S CIL_00091S_0002 VISTA 12:56158078-56760488
CIL_0007TC CIL_0007TC_0002 VISTA 12:56181967-56783344
CIL_0007XY CIL_0007XY_0002 VISTA 12:56220183-56821029
CIL_00045C CIL_00045C_0002 CGP 12:56611389-56712822
CIL_0000OF CIL_0000OF_0002 CGP 12:56691767-57197472

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IMP RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007492 IMP endoderm development
GO:0009887 TAS organ morphogenesis
GO:0042476 IGI odontogenesis
GO:0042481 IGI regulation of odontogenesis
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060325 IGI face morphogenesis
GO:0071363 IDA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053829 pax9 paired box gene 9 protein_coding Danio_rerio
ENSG00000198807 PAX9 paired box 9 protein_coding Homo_sapiens

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