C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402703 PAX9-201 ENSG00000198807 9606 + 14:36657568-36677804 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverLungMuscleOvaryPlacentaENST00000402703
Transcript ID Breast Liver Lung Muscle Ovary Placenta
ENST00000402703 0.158±0.00 0.233±0.00 0.859±0.51 0.032±0.00 1.446±1.30 0.047±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XR CIL_0008XR_0001 VISTA 14:36124115-36725121
CIL_0008R1 CIL_0008R1_0001 VISTA 14:36138356-36739990
CIL_00091S CIL_00091S_0001 VISTA 14:36141957-36745155
CIL_0007TC CIL_0007TC_0001 VISTA 14:36163945-36765327
CIL_0007XY CIL_0007XY_0001 VISTA 14:36204570-36805380
CIL_0007LS CIL_0007LS_0002 UCNEbase 14:36362793-37516218
CIL_00045C CIL_00045C_0001 CGP 14:36580579-36679715
CIL_0000OF CIL_0000OF_0001 CGP 14:36657568-37172866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153250 Pax9-001 protein_coding Mus_musculus 0 2370
ENSMUST00000001538 Pax9-201 protein_coding Mus_musculus 0 2193
ENSMUST00000152848 Pax9-002 retained_intron Mus_musculus 0 1725

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