C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CTD nuclear envelope phosphatase 1 regulatory subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205423 CNEP1R1 9606 + 16:50024410-50037088 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389134 CNEP1R1-007 50025234-50035600 nonsense_mediated_decay
  ENST00000427478 CNEP1R1-201 50025206-50037087 protein_coding
  ENST00000458059 CNEP1R1-001 50024410-50037088 protein_coding
  ENST00000562576 CNEP1R1-005 50025271-50035696 protein_coding
  ENST00000565457 CNEP1R1-002 50025280-50037080 nonsense_mediated_decay
  ENST00000565556 CNEP1R1-003 50025520-50036630 protein_coding
  ENST00000566093 CNEP1R1-009 50026160-50034156 protein_coding
  ENST00000566482 CNEP1R1-004 50025264-50034668 nonsense_mediated_decay
  ENST00000567712 CNEP1R1-010 50025241-50025784 processed_transcript
  ENST00000568890 CNEP1R1-006 50025255-50037085 nonsense_mediated_decay
  ENST00000569647 CNEP1R1-008 50025262-50026859 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000427478ENST00000458059ENST00000562576ENST00000565457ENST00000565556ENST00000566093ENST00000566482ENST00000567712ENST00000568890
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000427478 2.224±0.00 4.099±0.00 0.348±0.00 2.147±1.45 4.822±0.00 1.986±0.70 1.050±0.79 4.336±0.00 1.878±0.28 0.837±0.68 2.109±0.00 2.463±1.04 3.406±1.38 6.182±4.32
ENST00000458059 N/A N/A N/A N/A 0.326±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562576 2.230±0.00 N/A N/A N/A N/A 1.754±0.00 N/A N/A 2.443±0.00 N/A N/A N/A 2.485±0.00 2.312±0.00
ENST00000565457 0.622±0.00 N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A 0.736±0.00 N/A N/A N/A
ENST00000565556 N/A N/A 0.216±0.00 1.620±0.00 1.006±0.00 1.295±0.00 0.891±0.00 1.915±0.00 0.709±0.00 1.370±0.00 0.217±0.00 0.547±0.00 N/A 1.938±0.00
ENST00000566093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.948±0.53 N/A N/A
ENST00000566482 N/A N/A 1.074±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.399±0.00 N/A 2.268±0.00
ENST00000567712 N/A N/A 1.177±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568890 N/A N/A N/A 0.384±0.00 N/A N/A 2.014±0.00 0.480±0.00 N/A 0.281±0.06 N/A 1.743±0.33 1.782±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VV CIL_0002VV_0001 CGP 16:49487524-50037088
CIL_00078I CIL_00078I_0001 CGP 16:50024410-50106387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006629 IEA lipid metabolic process
GO:0010867 IGI positive regulation of triglyceride biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0031965 IDA nuclear membrane
GO:0034504 IDA protein localization to nucleus
GO:0035307 IEA positive regulation of protein dephosphorylation
GO:0071595 IEA Nem1-Spo7 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036064 cnep1r1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein_coding Danio_rerio
ENSMUSG00000036810 Cnep1r1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein_coding Mus_musculus

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