C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD nuclear envelope phosphatase 1 regulatory subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427478 CNEP1R1-201 ENSG00000205423 9606 + 16:50025206-50037087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000427478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000427478 2.224±0.00 4.099±0.00 0.348±0.00 2.147±1.45 4.822±0.00 1.986±0.70 1.050±0.79 4.336±0.00 1.878±0.28 0.837±0.68 2.109±0.00 2.463±1.04 3.406±1.38 6.182±4.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VV CIL_0002VV_0001 CGP 16:49487524-50037088
CIL_00078I CIL_00078I_0001 CGP 16:50024410-50106387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006629 IEA lipid metabolic process
GO:0010867 IGI positive regulation of triglyceride biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0031965 IDA nuclear membrane
GO:0034504 IDA protein localization to nucleus
GO:0035307 IEA:IDA positive regulation of protein dephosphorylation
GO:0071595 IEA:IDA Nem1-Spo7 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095214 Cnep1r1-001 protein_coding Mus_musculus 0 1129
ENSMUST00000127490 Cnep1r1-002 nonsense_mediated_decay Mus_musculus 0 804
ENSMUST00000128290 Cnep1r1-004 retained_intron Mus_musculus 0 645
ENSMUST00000117775 Cnep1r1-005 protein_coding Mus_musculus 0 558
ENSMUST00000131891 Cnep1r1-006 processed_transcript Mus_musculus 0 547
ENSMUST00000121097 Cnep1r1-003 protein_coding Mus_musculus 0 470

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