C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358511 COL6A6-001 ENSG00000206384 9606 + 3:130560334-130678155 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000358511
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000358511 0.085±0.00 0.027±0.00 0.232±0.02 0.298±0.20 0.266±0.00 0.191±0.18 2.204±0.72 0.034±0.01 0.176±0.18 0.113±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052M CIL_00052M_0002 CGP 3:130560334-130746829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098441 Col6a6-001 protein_coding Mus_musculus 0 6198
ENSMUST00000166431 Col6a6-201 protein_coding Mus_musculus 0 6176
ENSMUST00000060896 Col6a6-002 protein_coding Mus_musculus 0 3326

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