C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXVIII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000215018 COL28A1 9606 - 7:7356203-7535853 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399429 COL28A1-001 7357875-7535853 protein_coding
  ENST00000430711 COL28A1-005 7356203-7370841 nonsense_mediated_decay
  ENST00000435823 COL28A1-004 7431218-7437435 protein_coding
  ENST00000444268 COL28A1-002 7417632-7520073 nonsense_mediated_decay
  ENST00000453441 COL28A1-006 7356568-7360459 protein_coding
  ENST00000465339 COL28A1-003 7417632-7420310 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399429ENST00000430711ENST00000444268ENST00000453441
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399429 0.260±0.00 N/A 0.166±0.00 0.181±0.00 2.570±2.44 0.535±0.38 0.309±0.08 0.844±0.00 N/A 0.044±0.00 0.394±0.30 0.074±0.02 0.544±0.06
ENST00000430711 N/A N/A 0.190±0.00 0.304±0.00 0.301±0.00 N/A 0.423±0.00 0.093±0.00 0.823±0.00 0.061±0.00 0.440±0.00 0.095±0.01 0.382±0.00
ENST00000444268 N/A N/A N/A N/A 0.513±0.00 N/A N/A N/A 1.013±0.00 N/A N/A 0.112±0.00 N/A
ENST00000453441 N/A 0.411±0.00 0.500±0.00 1.004±0.00 N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V5 CIL_0002V5_0001 CGP 7:7356203-7608929

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0030198 TAS extracellular matrix organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074731 COL28A1 (1 of 4) collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSDARG00000076321 COL28A1 (2 of 4) collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSDARG00000077084 col28a1 collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSDARG00000087087 COL28A1 (4 of 4) collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSMUSG00000068794 Col28a1 collagen, type XXVIII, alpha 1 protein_coding Mus_musculus

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