C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXVIII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068794 Col28a1 10090 - 6:7997808-8192617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115537 Col28a1-001 7997808-8192617 protein_coding
  ENSMUST00000123163 Col28a1-002 8074822-8079748 processed_transcript
  ENSMUST00000134731 Col28a1-003 8021290-8022766 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115537ENSMUST00000123163
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115537 0.375±0.16 0.218±0.07 0.385±0.00 0.959±0.15 0.487±0.10 0.128±0.03 0.098±0.04 0.029±0.02 0.168±0.02 0.343±0.12 0.225±0.22 0.017±0.01 0.348±0.17
ENSMUST00000123163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.325±0.06 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V5 CIL_0002V5_0002 CGP 6:7997808-8236274

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005581 IEA collagen trimer
GO:0005604 IDA basement membrane
GO:0007155 IEA cell adhesion
GO:0008150 ND biological_process
GO:0010951 IEA negative regulation of endopeptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074731 COL28A1 (1 of 4) collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSDARG00000076321 COL28A1 (2 of 4) collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSDARG00000077084 col28a1 collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSDARG00000087087 COL28A1 (4 of 4) collagen, type XXVIII, alpha 1 protein_coding Danio_rerio
ENSG00000215018 COL28A1 collagen, type XXVIII, alpha 1 protein_coding Homo_sapiens

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