C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXVIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399429 COL28A1-001 ENSG00000215018 9606 - 7:7357875-7535853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000399429
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000399429 0.260±0.00 0.166±0.00 0.181±0.00 2.570±2.44 0.535±0.38 0.309±0.08 0.844±0.00 0.044±0.00 0.394±0.30 0.074±0.02 0.544±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V5 CIL_0002V5_0001 CGP 7:7356203-7608929

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0030198 TAS extracellular matrix organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115537 Col28a1-001 protein_coding Mus_musculus 0 3544
ENSMUST00000123163 Col28a1-002 processed_transcript Mus_musculus 0 241

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