C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 16 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000215305 VPS16 9606 + 20:2840703-2866732 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380443 VPS16-006 2862457-2866732 protein_coding
  ENST00000380445 VPS16-001 2840703-2866732 protein_coding
  ENST00000380469 VPS16-003 2840703-2866732 protein_coding
  ENST00000417508 VPS16-004 2840763-2862093 protein_coding
  ENST00000453689 VPS16-005 2840760-2864082 protein_coding
  ENST00000466415 VPS16-007 2865911-2866732 processed_transcript
  ENST00000481812 VPS16-008 2860970-2864230 processed_transcript
  ENST00000487461 VPS16-002 2863371-2865038 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380445
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380445 13.518±0.00 13.851±0.00 6.924±2.77 5.430±1.73 2.921±2.06 7.570±5.02 3.552±0.04 8.719±0.00 11.987±0.00 10.804±4.21 13.672±5.13 11.146±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_00006D CIL_00006D_0001 CGP 20:2816302-2841190
CIL_00012E CIL_00012E_0001 CGP 20:2835314-2866732
CIL_00006B CIL_00006B_0001 CGP 20:2840703-3039076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005884 IEA actin filament
GO:0006886 IEA intracellular protein transport
GO:0030424 IEA axon
GO:0030897 IDA HOPS complex
GO:0043025 IEA neuronal cell body
GO:0046718 IEA viral entry into host cell
GO:0051015 IEA actin filament binding
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059902 vps16 vacuolar protein sorting protein 16 protein_coding Danio_rerio
ENSMUSG00000027411 Vps16 vacuolar protein sorting 16 (yeast) protein_coding Mus_musculus

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