C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | vacuolar protein sorting 16 homolog (S. cerevisiae) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000380469  |
VPS16-003 |
ENSG00000215305 |
9606 | + |
20:2840703-2866732  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007SG | CIL_0007SG_0001 | VISTA | 20:2438562-3039143 |
| CIL_00006D | CIL_00006D_0001 | CGP | 20:2816302-2841190 |
| CIL_00012E | CIL_00012E_0001 | CGP | 20:2835314-2866732 |
| CIL_00006B | CIL_00006B_0001 | CGP | 20:2840703-3039076 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005737 | IEA | cytoplasm |
| GO:0005765 | IDA | lysosomal membrane |
| GO:0005769 | IDA | early endosome |
| GO:0005770 | IDA | late endosome |
| GO:0006886 | IEA | intracellular protein transport |
| GO:0030897 | IDA | HOPS complex |
| GO:0055037 | IDA | recycling endosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000028900
|
Vps16-001 | protein_coding | Mus_musculus | 0 | 1550 |
|
ENSMUST00000125098
|
Vps16-008 | retained_intron | Mus_musculus | 0 | 817 |
|
ENSMUST00000130258
|
Vps16-002 | processed_transcript | Mus_musculus | 0 | 808 |
|
ENSMUST00000128994
|
Vps16-003 | protein_coding | Mus_musculus | 0 | 763 |
|
ENSMUST00000132388
|
Vps16-004 | retained_intron | Mus_musculus | 0 | 684 |
|
ENSMUST00000131220
|
Vps16-007 | retained_intron | Mus_musculus | 0 | 494 |
|
ENSMUST00000125973
|
Vps16-005 | retained_intron | Mus_musculus | 0 | 466 |
|
ENSMUST00000134677
|
Vps16-009 | retained_intron | Mus_musculus | 0 | 337 |
