C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 16 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380445 VPS16-001 ENSG00000215305 9606 + 20:2840703-2866732 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380445
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380445 13.518±0.00 13.851±0.00 6.924±2.77 5.430±1.73 2.921±2.06 7.570±5.02 3.552±0.04 8.719±0.00 11.987±0.00 10.804±4.21 13.672±5.13 11.146±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_00006D CIL_00006D_0001 CGP 20:2816302-2841190
CIL_00012E CIL_00012E_0001 CGP 20:2835314-2866732
CIL_00006B CIL_00006B_0001 CGP 20:2840703-3039076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005884 IEA actin filament
GO:0006886 IEA intracellular protein transport
GO:0030424 IEA axon
GO:0030897 IDA HOPS complex
GO:0043025 IEA neuronal cell body
GO:0046718 IEA viral entry into host cell
GO:0051015 IEA actin filament binding
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028900 Vps16-001 protein_coding Mus_musculus 0 3219
ENSMUST00000125098 Vps16-008 retained_intron Mus_musculus 0 817
ENSMUST00000130258 Vps16-002 processed_transcript Mus_musculus 0 808
ENSMUST00000128994 Vps16-003 protein_coding Mus_musculus 0 763
ENSMUST00000132388 Vps16-004 retained_intron Mus_musculus 0 684
ENSMUST00000137084 Vps16-006 retained_intron Mus_musculus 0 507
ENSMUST00000131220 Vps16-007 retained_intron Mus_musculus 0 494
ENSMUST00000125973 Vps16-005 retained_intron Mus_musculus 0 466
ENSMUST00000134677 Vps16-009 retained_intron Mus_musculus 0 337

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