C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gametogenetin binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000278311 GGNBP2 9606 + 17:36544888-36589848 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000611219 GGNBP2-004 36544912-36547747 protein_coding
  ENST00000612563 GGNBP2-007 36585893-36586827 retained_intron
  ENST00000613102 GGNBP2-001 36544888-36589848 protein_coding
  ENST00000615952 GGNBP2-008 36586134-36587596 protein_coding
  ENST00000616019 GGNBP2-006 36545504-36560818 protein_coding
  ENST00000617860 GGNBP2-003 36544919-36582477 retained_intron
  ENST00000618837 GGNBP2-002 36544932-36586158 retained_intron
  ENST00000619573 GGNBP2-005 36576657-36586153 retained_intron
  ENST00000620927 GGNBP2-009 36586936-36589577 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000612563ENST00000613102ENST00000619573ENST00000620927
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000612563 N/A N/A N/A N/A N/A N/A 2.310±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000613102 7.462±0.00 28.536±0.00 2.858±0.00 18.098±12.70 10.877±7.85 4.368±0.69 3.087±1.40 5.122±0.00 3.215±0.81 5.484±3.13 8.760±7.51 18.653±8.08 12.594±3.10 43.217±0.00
ENST00000619573 N/A N/A N/A 1.717±0.00 N/A 2.291±0.00 0.733±0.00 N/A 2.277±0.00 3.742±0.00 0.631±0.00 7.825±2.45 N/A N/A
ENST00000620927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.101±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085R CIL_00085R_0001 VISTA 17:36355391-36956100
CIL_0007YB CIL_0007YB_0001 VISTA 17:36401446-37002205
CIL_0007YB CIL_0007YB_0003 VISTA 17:36402232-37002285
CIL_0005HP CIL_0005HP_0002 CGP 17:36535020-36589848
CIL_0005HQ CIL_0005HQ_0002 CGP 17:36544888-36600806

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055086 ggnbp2 gametogenetin binding protein 2 protein_coding Danio_rerio
ENSMUSG00000020530 Ggnbp2 gametogenetin binding protein 2 protein_coding Mus_musculus

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