C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gametogenetin binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613102 GGNBP2-001 ENSG00000278311 9606 + 17:36544888-36589848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000613102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000613102 7.462±0.00 28.536±0.00 2.858±0.00 18.098±12.70 10.877±7.85 4.368±0.69 3.087±1.40 5.122±0.00 3.215±0.81 5.484±3.13 8.760±7.51 18.653±8.08 12.594±3.10 43.217±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085R CIL_00085R_0001 VISTA 17:36355391-36956100
CIL_0007YB CIL_0007YB_0001 VISTA 17:36401446-37002205
CIL_0007YB CIL_0007YB_0003 VISTA 17:36402232-37002285
CIL_0005HP CIL_0005HP_0002 CGP 17:36535020-36589848
CIL_0005HQ CIL_0005HQ_0002 CGP 17:36544888-36600806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168434 Ggnbp2-001 protein_coding Mus_musculus 0 3925
ENSMUST00000108081 Ggnbp2-007 protein_coding Mus_musculus 0 3875
ENSMUST00000172405 Ggnbp2-201 protein_coding Mus_musculus 0 3703
ENSMUST00000154915 Ggnbp2-003 protein_coding Mus_musculus 0 3426
ENSMUST00000018547 Ggnbp2-002 protein_coding Mus_musculus 0 2451
ENSMUST00000100686 Ggnbp2-008 protein_coding Mus_musculus 0 1871
ENSMUST00000170741 Ggnbp2-012 protein_coding Mus_musculus 0 688
ENSMUST00000166425 Ggnbp2-009 protein_coding Mus_musculus 0 544
ENSMUST00000132098 Ggnbp2-005 protein_coding Mus_musculus 0 494
ENSMUST00000165459 Ggnbp2-010 retained_intron Mus_musculus 0 477
ENSMUST00000168267 Ggnbp2-011 processed_transcript Mus_musculus 0 374
ENSMUST00000167429 Ggnbp2-006 processed_transcript Mus_musculus 0 305
ENSMUST00000134043 Ggnbp2-004 processed_transcript Mus_musculus 0 235

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